Hb_001231_020

Information

Type -
Description -
Location Contig1231: 65049-65584
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07028: 63755-65925 , PASA_asmbl_07030: 63332-65645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_020 0.0 - - -
2 Hb_005551_030 0.0152195395 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
3 Hb_106274_010 0.0193481531 - - hypothetical protein VITISV_008825 [Vitis vinifera]
4 Hb_005666_030 0.0304466976 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
5 Hb_004968_090 0.0323575294 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
6 Hb_001691_130 0.041460706 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
7 Hb_002630_030 0.0675322001 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
8 Hb_000367_150 0.0757509487 - - -
9 Hb_011987_010 0.0759993142 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_019135_010 0.0940078943 - - -
11 Hb_015824_020 0.0967518267 - - -
12 Hb_023386_030 0.1000849678 - - -
13 Hb_007632_140 0.1078026208 - - -
14 Hb_007456_030 0.1155390452 - - -
15 Hb_000362_100 0.1345601235 - - -
16 Hb_000497_310 0.1356741462 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011716_120 0.1371451197 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
18 Hb_000476_030 0.1381453156 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
19 Hb_005029_030 0.1389594092 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
20 Hb_014109_020 0.1497463874 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]

Gene co-expression network

sample Hb_001231_020 Hb_001231_020 Hb_005551_030 Hb_005551_030 Hb_001231_020--Hb_005551_030 Hb_106274_010 Hb_106274_010 Hb_001231_020--Hb_106274_010 Hb_005666_030 Hb_005666_030 Hb_001231_020--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_001231_020--Hb_004968_090 Hb_001691_130 Hb_001691_130 Hb_001231_020--Hb_001691_130 Hb_002630_030 Hb_002630_030 Hb_001231_020--Hb_002630_030 Hb_005551_030--Hb_005666_030 Hb_005551_030--Hb_004968_090 Hb_005551_030--Hb_106274_010 Hb_005551_030--Hb_001691_130 Hb_005551_030--Hb_002630_030 Hb_106274_010--Hb_005666_030 Hb_106274_010--Hb_004968_090 Hb_106274_010--Hb_001691_130 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010 Hb_005666_030--Hb_004968_090 Hb_005666_030--Hb_001691_130 Hb_005666_030--Hb_002630_030 Hb_004968_090--Hb_001691_130 Hb_004968_090--Hb_002630_030 Hb_001691_130--Hb_002630_030 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.264401 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.236276 2.05023

CAGE analysis