Hb_001231_030

Information

Type -
Description -
Location Contig1231: 90346-92337
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12690g
description POPTRDRAFT_578909; hypothetical protein
nr
ID XP_012081198.1
description PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
swissprot
ID Q6AVI0
description Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica GN=Os03g0733400 PE=2 SV=1
trembl
ID B9IMV0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12690g PE=4 SV=1
Gene Ontology
ID GO:0005829
description bed zinc family dimerization domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07033: 89158-92608 , PASA_asmbl_07035: 89403-89618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_030 0.0 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
2 Hb_006787_060 0.0586129707 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
3 Hb_002902_020 0.0651135796 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
4 Hb_004629_010 0.0753152866 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
5 Hb_002997_160 0.0774064657 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
6 Hb_005104_010 0.0779067054 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
7 Hb_000753_100 0.0781577691 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
8 Hb_003929_140 0.0798686275 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000345_150 0.0803563657 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
10 Hb_007813_030 0.0825280503 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
11 Hb_000062_470 0.0870878304 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
12 Hb_002571_030 0.0882632806 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
13 Hb_002282_060 0.0904636546 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_000577_030 0.0920471744 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
15 Hb_001021_200 0.0929122463 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
16 Hb_000230_430 0.0931159404 - - catalytic, putative [Ricinus communis]
17 Hb_005214_150 0.0936543957 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
18 Hb_118840_050 0.0944540455 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
19 Hb_000786_040 0.0951664502 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
20 Hb_002073_280 0.0959371083 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001231_030 Hb_001231_030 Hb_006787_060 Hb_006787_060 Hb_001231_030--Hb_006787_060 Hb_002902_020 Hb_002902_020 Hb_001231_030--Hb_002902_020 Hb_004629_010 Hb_004629_010 Hb_001231_030--Hb_004629_010 Hb_002997_160 Hb_002997_160 Hb_001231_030--Hb_002997_160 Hb_005104_010 Hb_005104_010 Hb_001231_030--Hb_005104_010 Hb_000753_100 Hb_000753_100 Hb_001231_030--Hb_000753_100 Hb_006787_060--Hb_004629_010 Hb_032920_130 Hb_032920_130 Hb_006787_060--Hb_032920_130 Hb_133047_010 Hb_133047_010 Hb_006787_060--Hb_133047_010 Hb_000935_090 Hb_000935_090 Hb_006787_060--Hb_000935_090 Hb_002022_070 Hb_002022_070 Hb_006787_060--Hb_002022_070 Hb_000230_430 Hb_000230_430 Hb_002902_020--Hb_000230_430 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_002902_020--Hb_000345_490 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_002997_160--Hb_000753_100 Hb_001117_190 Hb_001117_190 Hb_002997_160--Hb_001117_190 Hb_011909_060 Hb_011909_060 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_002997_160--Hb_003929_140 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_005104_010--Hb_000120_660 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_000345_150 Hb_000345_150 Hb_005104_010--Hb_000345_150 Hb_003106_030 Hb_003106_030 Hb_005104_010--Hb_003106_030 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0978 28.6169 14.9274 8.75592 19.7709 20.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43798 3.53164 6.08761 9.49504 12.9656

CAGE analysis