Hb_001231_070

Information

Type -
Description -
Location Contig1231: 137941-138539
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07038: 138035-143487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_070 0.0 - - -
2 Hb_006995_010 0.1699745771 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
3 Hb_068014_010 0.1916046993 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
4 Hb_169170_010 0.1927644013 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
5 Hb_001222_040 0.1980217916 - - -
6 Hb_003656_150 0.1987757972 - - -
7 Hb_000683_090 0.2013634729 - - stress enhanced protein [Medicago truncatula]
8 Hb_005542_090 0.2031712628 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
9 Hb_000261_360 0.2039956154 - - unknown [Lotus japonicus]
10 Hb_001623_290 0.2040876327 - - unknown [Populus trichocarpa]
11 Hb_007447_020 0.2043609126 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
12 Hb_025905_020 0.2062053341 - - major allergen Pru ar 1-like [Jatropha curcas]
13 Hb_031866_050 0.2068837227 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
14 Hb_122567_020 0.2091281937 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
15 Hb_000204_020 0.2097721605 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
16 Hb_007083_020 0.2098977174 - - hypothetical protein F775_15403 [Aegilops tauschii]
17 Hb_108227_010 0.210328786 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
18 Hb_000082_020 0.2108009698 - - -
19 Hb_088065_010 0.2125725952 - - hypothetical protein glysoja_007934 [Glycine soja]
20 Hb_001623_300 0.2187334568 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]

Gene co-expression network

sample Hb_001231_070 Hb_001231_070 Hb_006995_010 Hb_006995_010 Hb_001231_070--Hb_006995_010 Hb_068014_010 Hb_068014_010 Hb_001231_070--Hb_068014_010 Hb_169170_010 Hb_169170_010 Hb_001231_070--Hb_169170_010 Hb_001222_040 Hb_001222_040 Hb_001231_070--Hb_001222_040 Hb_003656_150 Hb_003656_150 Hb_001231_070--Hb_003656_150 Hb_000683_090 Hb_000683_090 Hb_001231_070--Hb_000683_090 Hb_006995_010--Hb_003656_150 Hb_000289_080 Hb_000289_080 Hb_006995_010--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_006995_010--Hb_003029_100 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010 Hb_177103_010 Hb_177103_010 Hb_169170_010--Hb_177103_010 Hb_169170_010--Hb_006198_090 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_001222_040--Hb_000683_090 Hb_001222_040--Hb_169170_010 Hb_001222_040--Hb_006995_010 Hb_000082_020 Hb_000082_020 Hb_001222_040--Hb_000082_020 Hb_008096_020 Hb_008096_020 Hb_001222_040--Hb_008096_020 Hb_003656_150--Hb_007188_030 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_000683_090--Hb_007447_020 Hb_000683_090--Hb_005318_020 Hb_000683_090--Hb_008096_020 Hb_031866_050 Hb_031866_050 Hb_000683_090--Hb_031866_050 Hb_000683_090--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18617 1.53716 1.52472 15.3417 1.39166 35.2446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2675 2.21168 1.50028 1.37615 0

CAGE analysis