Hb_001231_080

Information

Type -
Description -
Location Contig1231: 141154-143151
Sequence    

Annotation

kegg
ID sly:104644837
description zinc finger BED domain-containing protein DAYSLEEPER-like
nr
ID XP_011457831.1
description PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
swissprot
ID Q9M2N5
description Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana GN=HAT PE=1 SV=1
trembl
ID A0A0D2V6D0
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G061500 PE=4 SV=1
Gene Ontology
ID GO:0005829
description bed zinc family dimerization domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07038: 138035-143487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_080 0.0 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
2 Hb_000836_370 0.0860480105 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
3 Hb_005000_300 0.1008267597 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
4 Hb_000056_300 0.1102302268 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
5 Hb_002942_110 0.1108352675 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
6 Hb_128695_030 0.1117407138 - - heat shock protein, putative [Ricinus communis]
7 Hb_004195_120 0.1132033585 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
8 Hb_001369_770 0.1149763701 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
9 Hb_001865_060 0.1182476912 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
10 Hb_004218_090 0.1207813085 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_005054_310 0.1233921727 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
12 Hb_018301_010 0.1247121396 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_005649_090 0.1264123894 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
14 Hb_003506_070 0.1304095567 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
15 Hb_000465_080 0.1309139773 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
16 Hb_003226_110 0.1319064253 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
17 Hb_000599_130 0.1322903134 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
18 Hb_000175_500 0.133884037 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
19 Hb_127599_010 0.1346500261 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
20 Hb_020178_050 0.1366085809 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]

Gene co-expression network

sample Hb_001231_080 Hb_001231_080 Hb_000836_370 Hb_000836_370 Hb_001231_080--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_001231_080--Hb_005000_300 Hb_000056_300 Hb_000056_300 Hb_001231_080--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_001231_080--Hb_002942_110 Hb_128695_030 Hb_128695_030 Hb_001231_080--Hb_128695_030 Hb_004195_120 Hb_004195_120 Hb_001231_080--Hb_004195_120 Hb_005054_310 Hb_005054_310 Hb_000836_370--Hb_005054_310 Hb_000836_370--Hb_005000_300 Hb_000836_370--Hb_000056_300 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_001484_100 Hb_001484_100 Hb_000836_370--Hb_001484_100 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_005000_300--Hb_000056_300 Hb_005000_300--Hb_003078_030 Hb_005000_300--Hb_005054_310 Hb_000056_300--Hb_128695_030 Hb_000056_300--Hb_003078_030 Hb_000056_300--Hb_005054_310 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_002942_110--Hb_004195_120 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_178127_010 Hb_178127_010 Hb_128695_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_128695_030--Hb_001565_020 Hb_128695_030--Hb_005054_310 Hb_128695_030--Hb_000836_370 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.2556 24.8682 8.91378 4.52078 4.303 6.38861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69451 1.11996 2.62939 5.54492 2.0287

CAGE analysis