Hb_001231_090

Information

Type -
Description -
Location Contig1231: 194889-204368
Sequence    

Annotation

kegg
ID rcu:RCOM_0272140
description hypothetical protein
nr
ID XP_012081190.1
description PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
swissprot
ID Q8BH15
description CCR4-NOT transcription complex subunit 10 OS=Mus musculus GN=Cnot10 PE=2 SV=1
trembl
ID A0A067K2C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17029 PE=4 SV=1
Gene Ontology
ID GO:0006007
description ccr4-not transcription complex subunit 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07040: 196265-196488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_090 0.0 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
2 Hb_002542_130 0.0532512471 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
3 Hb_002282_060 0.0622755027 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
4 Hb_004976_010 0.0624790327 - - hypothetical protein RCOM_1429110 [Ricinus communis]
5 Hb_001534_210 0.0640424848 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
6 Hb_004032_230 0.0642388698 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
7 Hb_005523_020 0.0665737192 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
8 Hb_002027_280 0.0671144676 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
9 Hb_155159_010 0.0676626796 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
10 Hb_004429_010 0.0688571618 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_010661_020 0.0689240972 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
12 Hb_000264_070 0.0699758206 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
13 Hb_001277_300 0.0706442617 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
14 Hb_012305_030 0.0707899287 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
15 Hb_000205_260 0.0737667291 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
16 Hb_000703_130 0.0738766171 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
17 Hb_003124_160 0.0742451227 - - dynamin, putative [Ricinus communis]
18 Hb_000230_090 0.0744572779 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
19 Hb_002085_030 0.0747399246 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
20 Hb_001021_200 0.0754685696 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_001231_090 Hb_001231_090 Hb_002542_130 Hb_002542_130 Hb_001231_090--Hb_002542_130 Hb_002282_060 Hb_002282_060 Hb_001231_090--Hb_002282_060 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_002542_130--Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_002282_060--Hb_155159_010 Hb_002073_280 Hb_002073_280 Hb_002282_060--Hb_002073_280 Hb_010661_020 Hb_010661_020 Hb_002282_060--Hb_010661_020 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_001534_210--Hb_004032_230 Hb_007426_060 Hb_007426_060 Hb_001534_210--Hb_007426_060 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_102438_030 Hb_102438_030 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_004032_230--Hb_003849_140 Hb_000205_260 Hb_000205_260 Hb_005523_020--Hb_000205_260 Hb_005523_020--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_005523_020--Hb_000457_230 Hb_005523_020--Hb_001636_050 Hb_007305_020 Hb_007305_020 Hb_005523_020--Hb_007305_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.98463 15.904 10.2357 7.54317 9.6919 9.49095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88429 4.56366 4.23633 6.86483 9.83904

CAGE analysis