Hb_001232_010

Information

Type -
Description -
Location Contig1232: 2765-16691
Sequence    

Annotation

kegg
ID rcu:RCOM_1495090
description hypothetical protein
nr
ID XP_012073340.1
description PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
swissprot
ID Q03666
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067KZH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06270 PE=4 SV=1
Gene Ontology
ID GO:0044699
description PREDICTED: uncharacterized protein LOC105634976

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07046: 6087-7067 , PASA_asmbl_07048: 10132-11108 , PASA_asmbl_07050: 13176-15987 , PASA_asmbl_07051: 16278-16690
cDNA
(Sanger)
(ID:Location)		 002_E18.ab1: 6078-7052

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_010 0.0 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
2 Hb_003647_130 0.0686266004 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
3 Hb_002217_030 0.0698438603 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
4 Hb_001761_130 0.0759535725 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
5 Hb_001157_090 0.0803431874 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
6 Hb_002477_090 0.0814554872 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
7 Hb_143629_110 0.0945384727 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
8 Hb_003464_080 0.0951139761 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
9 Hb_006569_030 0.0969032511 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
10 Hb_000900_030 0.0974986101 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
11 Hb_009079_030 0.0978477807 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
12 Hb_005048_100 0.0985499839 - - secretory carrier membrane protein, putative [Ricinus communis]
13 Hb_000200_120 0.09904103 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
14 Hb_000140_480 0.0993529501 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
15 Hb_001473_180 0.0995716536 - - glutathione reductase [Hevea brasiliensis]
16 Hb_001178_070 0.1009424415 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
17 Hb_017862_020 0.1026791421 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
18 Hb_000614_240 0.1049257214 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
19 Hb_002784_020 0.1057685385 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
20 Hb_000106_120 0.106444029 - - hypothetical protein glysoja_007050 [Glycine soja]

Gene co-expression network

sample Hb_001232_010 Hb_001232_010 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001761_130 Hb_001761_130 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_002477_090 Hb_002477_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_009079_030 Hb_009079_030 Hb_003647_130--Hb_009079_030 Hb_000614_240 Hb_000614_240 Hb_003647_130--Hb_000614_240 Hb_001473_180 Hb_001473_180 Hb_003647_130--Hb_001473_180 Hb_003294_070 Hb_003294_070 Hb_003647_130--Hb_003294_070 Hb_017862_020 Hb_017862_020 Hb_003647_130--Hb_017862_020 Hb_003464_080 Hb_003464_080 Hb_002217_030--Hb_003464_080 Hb_000200_120 Hb_000200_120 Hb_002217_030--Hb_000200_120 Hb_000182_040 Hb_000182_040 Hb_002217_030--Hb_000182_040 Hb_001860_030 Hb_001860_030 Hb_002217_030--Hb_001860_030 Hb_001235_140 Hb_001235_140 Hb_002217_030--Hb_001235_140 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_001761_130--Hb_002477_090 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110 Hb_000739_100 Hb_000739_100 Hb_001157_090--Hb_000739_100 Hb_000028_180 Hb_000028_180 Hb_001157_090--Hb_000028_180 Hb_001252_120 Hb_001252_120 Hb_001157_090--Hb_001252_120 Hb_002784_020 Hb_002784_020 Hb_001157_090--Hb_002784_020 Hb_004324_130 Hb_004324_130 Hb_001157_090--Hb_004324_130 Hb_001157_090--Hb_017862_020 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_032202_200 Hb_032202_200 Hb_143629_110--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_143629_110--Hb_123903_010 Hb_000390_320 Hb_000390_320 Hb_143629_110--Hb_000390_320 Hb_001617_060 Hb_001617_060 Hb_143629_110--Hb_001617_060 Hb_025477_040 Hb_025477_040 Hb_143629_110--Hb_025477_040 Hb_000617_180 Hb_000617_180 Hb_143629_110--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.53001 7.96634 5.99155 7.68445 10.9515 8.79958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5088 7.36139 8.47826 20.2554 6.08789

CAGE analysis