Hb_001232_090

Information

Type -
Description -
Location Contig1232: 69154-80981
Sequence    

Annotation

kegg
ID rcu:RCOM_0980890
description regulator of telomere elongation helicase 1 rtel1, putative
nr
ID XP_012073335.1
description PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
swissprot
ID A4K436
description Regulator of telomere elongation helicase 1 OS=Bos taurus GN=RTEL1 PE=2 SV=1
trembl
ID B9SQD1
description Regulator of telomere elongation helicase 1 rtel1, putative OS=Ricinus communis GN=RCOM_0980890 PE=4 SV=1
Gene Ontology
ID GO:0005634
description regulator of telomere elongation helicase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07053: 68225-71278 , PASA_asmbl_07054: 71882-72459 , PASA_asmbl_07055: 72679-76324 , PASA_asmbl_07056: 78087-79129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_090 0.0 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
2 Hb_005903_020 0.1052561059 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
3 Hb_013405_070 0.1057096892 - - ferric-chelate reductase, putative [Ricinus communis]
4 Hb_005271_140 0.110642799 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
5 Hb_000406_030 0.1138400601 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
6 Hb_011381_040 0.1192213636 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
7 Hb_004155_020 0.1215770524 transcription factor TF Family: MYB myb, putative [Ricinus communis]
8 Hb_008725_270 0.1255513364 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
9 Hb_010534_020 0.1259297312 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
10 Hb_000310_120 0.1270856826 - - PREDICTED: probable transaldolase [Jatropha curcas]
11 Hb_003894_030 0.1296053863 - - plant sec1, putative [Ricinus communis]
12 Hb_003740_020 0.1309886357 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_124677_030 0.1310014679 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
14 Hb_000000_330 0.1336332182 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
15 Hb_000364_170 0.1340725915 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
16 Hb_000684_120 0.1352548131 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
17 Hb_001377_530 0.1396740139 - - NC domain-containing family protein [Populus trichocarpa]
18 Hb_003680_220 0.1398270258 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
19 Hb_000926_060 0.1402385497 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003835_110 0.1406994173 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001232_090 Hb_001232_090 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_004108_210 Hb_004108_210 Hb_005903_020--Hb_004108_210 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_005271_140--Hb_000684_120 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570 Hb_003835_110 Hb_003835_110 Hb_011381_040--Hb_003835_110 Hb_006588_190 Hb_006588_190 Hb_011381_040--Hb_006588_190 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_002871_040 Hb_002871_040 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_002027_320 Hb_002027_320 Hb_011381_040--Hb_002027_320 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000526_010 Hb_000526_010 Hb_004155_020--Hb_000526_010 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_004155_020--Hb_000563_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250223 0.322342 2.18767 1.35948 0.240656 0.11853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.334292 0.294635 0.282155 0.75092 0.651963

CAGE analysis