Hb_001232_130

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig1232: 93036-94274
Sequence    

Annotation

kegg
ID rcu:RCOM_0980850
description transcription factor, putative
nr
ID XP_012073331.1
description PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067KQH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06259 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor asil1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07060: 92719-95118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_130 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
2 Hb_002307_090 0.0741771551 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
3 Hb_001946_320 0.0744696485 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
4 Hb_000749_250 0.0850732885 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
5 Hb_003943_030 0.0877855208 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
6 Hb_010589_040 0.1134873253 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002936_050 0.1134894329 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
8 Hb_007229_060 0.1157053268 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
9 Hb_005539_240 0.1172663118 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
10 Hb_000861_040 0.1190674292 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
11 Hb_015934_020 0.1194822228 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_006594_020 0.125589233 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
13 Hb_007429_030 0.1283042353 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
14 Hb_002078_460 0.1285149529 - - -
15 Hb_008085_040 0.1287192864 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
16 Hb_183612_100 0.129584168 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
17 Hb_003408_030 0.1298829874 - - PREDICTED: protein YIF1B [Jatropha curcas]
18 Hb_000165_010 0.1320181988 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
19 Hb_001437_240 0.1326845891 - - -
20 Hb_019654_090 0.134701017 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]

Gene co-expression network

sample Hb_001232_130 Hb_001232_130 Hb_002307_090 Hb_002307_090 Hb_001232_130--Hb_002307_090 Hb_001946_320 Hb_001946_320 Hb_001232_130--Hb_001946_320 Hb_000749_250 Hb_000749_250 Hb_001232_130--Hb_000749_250 Hb_003943_030 Hb_003943_030 Hb_001232_130--Hb_003943_030 Hb_010589_040 Hb_010589_040 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_002307_090--Hb_001946_320 Hb_007229_060 Hb_007229_060 Hb_002307_090--Hb_007229_060 Hb_000861_040 Hb_000861_040 Hb_002307_090--Hb_000861_040 Hb_005000_290 Hb_005000_290 Hb_002307_090--Hb_005000_290 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030 Hb_001946_320--Hb_010589_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_001946_320--Hb_007229_060 Hb_000749_250--Hb_003943_030 Hb_001143_090 Hb_001143_090 Hb_000749_250--Hb_001143_090 Hb_163950_010 Hb_163950_010 Hb_000749_250--Hb_163950_010 Hb_001959_160 Hb_001959_160 Hb_000749_250--Hb_001959_160 Hb_000749_250--Hb_001946_320 Hb_003943_030--Hb_001959_160 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040 Hb_010589_040--Hb_000861_040 Hb_010589_040--Hb_015934_020 Hb_012522_030 Hb_012522_030 Hb_010589_040--Hb_012522_030 Hb_010589_040--Hb_002307_090 Hb_010589_040--Hb_002291_030 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
287.578 69.8386 26.5971 32.8422 241.904 212.918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
444.683 635.495 863.841 72.784 51.7138

CAGE analysis