Hb_001232_140

Information

Type -
Description -
Location Contig1232: 98755-102051
Sequence    

Annotation

kegg
ID rcu:RCOM_0980540
description hypothetical protein
nr
ID XP_012073329.1
description PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06258 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07061: 98848-101954 , PASA_asmbl_07062: 99011-101512 , PASA_asmbl_07063: 98894-101955 , PASA_asmbl_07064: 98987-100849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_140 0.0 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
2 Hb_001135_210 0.0738318767 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
3 Hb_005663_120 0.0930413804 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
4 Hb_032969_030 0.1022195238 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_000896_120 0.1030283714 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_000099_130 0.1048256001 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
7 Hb_001157_010 0.1051163857 - - deoxyhypusine synthase, putative [Ricinus communis]
8 Hb_000784_030 0.1067003207 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
9 Hb_001096_030 0.1100269134 - - uridylate kinase plant, putative [Ricinus communis]
10 Hb_000398_160 0.1111253863 - - GDP-mannose transporter, putative [Ricinus communis]
11 Hb_005527_040 0.1200990322 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
12 Hb_000300_390 0.1217995788 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
13 Hb_003581_220 0.1248072352 - - unnamed protein product [Vitis vinifera]
14 Hb_001314_040 0.125004562 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
15 Hb_020419_020 0.1255697606 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_003929_120 0.128830608 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
17 Hb_000236_150 0.1301743364 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_006569_100 0.1305785132 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
19 Hb_000001_070 0.1317854635 - - -
20 Hb_000836_130 0.1318374471 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001232_140 Hb_001232_140 Hb_001135_210 Hb_001135_210 Hb_001232_140--Hb_001135_210 Hb_005663_120 Hb_005663_120 Hb_001232_140--Hb_005663_120 Hb_032969_030 Hb_032969_030 Hb_001232_140--Hb_032969_030 Hb_000896_120 Hb_000896_120 Hb_001232_140--Hb_000896_120 Hb_000099_130 Hb_000099_130 Hb_001232_140--Hb_000099_130 Hb_001157_010 Hb_001157_010 Hb_001232_140--Hb_001157_010 Hb_001135_210--Hb_000099_130 Hb_002182_030 Hb_002182_030 Hb_001135_210--Hb_002182_030 Hb_000784_030 Hb_000784_030 Hb_001135_210--Hb_000784_030 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_032969_030--Hb_001157_010 Hb_183086_040 Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000896_120--Hb_000922_100 Hb_000896_120--Hb_000300_390 Hb_000215_180 Hb_000215_180 Hb_000896_120--Hb_000215_180 Hb_000896_120--Hb_005663_120 Hb_000141_020 Hb_000141_020 Hb_000099_130--Hb_000141_020 Hb_001159_080 Hb_001159_080 Hb_000099_130--Hb_001159_080 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9611 6.92094 8.61836 27.7025 10.3832 16.8375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.9025 109.59 108.412 18.7666 9.30668

CAGE analysis