Hb_001232_190

Information

Type -
Description -
Location Contig1232: 155059-160993
Sequence    

Annotation

kegg
ID cic:CICLE_v10024397mg
description hypothetical protein
nr
ID XP_012079310.1
description PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LN00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17411 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07071: 155365-160963 , PASA_asmbl_07072: 155366-160942 , PASA_asmbl_07073: 156538-160942 , PASA_asmbl_07074: 158177-158559 , PASA_asmbl_07075: 158607-158953 , PASA_asmbl_07076: 159824-160193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_190 0.0 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
2 Hb_008616_050 0.0501082838 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
3 Hb_000579_120 0.0548641871 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
4 Hb_109000_020 0.0671845298 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
5 Hb_002641_060 0.0726908864 - - prefoldin subunit, putative [Ricinus communis]
6 Hb_000058_130 0.0735835871 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
7 Hb_000207_150 0.0735959914 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
8 Hb_002553_060 0.0750016647 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
9 Hb_004545_110 0.0752485753 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
10 Hb_009898_050 0.0767790779 - - PREDICTED: beta-taxilin [Jatropha curcas]
11 Hb_000000_150 0.0769373659 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
12 Hb_030736_020 0.0770182455 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027380_060 0.0785302272 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
14 Hb_000110_310 0.0790601855 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_013575_010 0.0803472944 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
16 Hb_005800_030 0.0808383899 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
17 Hb_000976_120 0.0813736982 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
18 Hb_003878_150 0.0827656801 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
19 Hb_001472_100 0.0839714729 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_000676_120 0.0841577508 - - -

Gene co-expression network

sample Hb_001232_190 Hb_001232_190 Hb_008616_050 Hb_008616_050 Hb_001232_190--Hb_008616_050 Hb_000579_120 Hb_000579_120 Hb_001232_190--Hb_000579_120 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_002641_060 Hb_002641_060 Hb_001232_190--Hb_002641_060 Hb_000058_130 Hb_000058_130 Hb_001232_190--Hb_000058_130 Hb_000207_150 Hb_000207_150 Hb_001232_190--Hb_000207_150 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_000579_120--Hb_000058_130 Hb_000110_310 Hb_000110_310 Hb_000579_120--Hb_000110_310 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000579_120--Hb_000207_150 Hb_003878_150 Hb_003878_150 Hb_109000_020--Hb_003878_150 Hb_009328_020 Hb_009328_020 Hb_109000_020--Hb_009328_020 Hb_109000_020--Hb_008616_050 Hb_001662_100 Hb_001662_100 Hb_109000_020--Hb_001662_100 Hb_041290_020 Hb_041290_020 Hb_109000_020--Hb_041290_020 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_000107_230 Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7544 6.88517 17.1035 23.5063 13.1617 14.4306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6867 18.1879 9.24428 12.1156 15.8302

CAGE analysis