Hb_001233_020

Information

Type -
Description -
Location Contig1233: 51731-55586
Sequence    

Annotation

kegg
ID cic:CICLE_v10010074mg
description hypothetical protein
nr
ID KDP38756.1
description hypothetical protein JCGZ_04109 [Jatropha curcas]
swissprot
ID Q945L0
description Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1
trembl
ID A0A067KRE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04109 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cytochrome c oxidase subunit 6b-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07091: 41427-55680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001233_020 0.0 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
2 Hb_001220_010 0.1018094824 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
3 Hb_132180_010 0.1060952544 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
4 Hb_004669_030 0.1132288881 - - -
5 Hb_000671_120 0.120180216 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
6 Hb_080601_020 0.1520489428 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
7 Hb_000994_110 0.1527583345 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001163_040 0.1549523592 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
9 Hb_000635_070 0.1589025383 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
10 Hb_182964_010 0.1595078637 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
11 Hb_006452_110 0.1608725684 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
12 Hb_000240_120 0.1614140203 - - ras-related protein Rab-5B [Reticulomyxa filosa]
13 Hb_002078_260 0.1627448288 - - unknown [Populus trichocarpa]
14 Hb_007894_230 0.1643792209 - - 30S ribosomal protein S14, putative [Ricinus communis]
15 Hb_000215_200 0.1658360025 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
16 Hb_001754_070 0.1698626139 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
17 Hb_029142_070 0.1710014707 - - -
18 Hb_000340_520 0.171166781 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
19 Hb_006995_040 0.1719866104 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
20 Hb_000243_040 0.175617148 - - -

Gene co-expression network

sample Hb_001233_020 Hb_001233_020 Hb_001220_010 Hb_001220_010 Hb_001233_020--Hb_001220_010 Hb_132180_010 Hb_132180_010 Hb_001233_020--Hb_132180_010 Hb_004669_030 Hb_004669_030 Hb_001233_020--Hb_004669_030 Hb_000671_120 Hb_000671_120 Hb_001233_020--Hb_000671_120 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_001220_010--Hb_080601_020 Hb_001220_010--Hb_132180_010 Hb_001220_010--Hb_000671_120 Hb_001220_010--Hb_004669_030 Hb_007894_230 Hb_007894_230 Hb_001220_010--Hb_007894_230 Hb_002078_260 Hb_002078_260 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_000671_120 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_004669_030--Hb_000671_120 Hb_004669_030--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_080601_020--Hb_007894_230 Hb_000710_070 Hb_000710_070 Hb_080601_020--Hb_000710_070 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030 Hb_001163_040 Hb_001163_040 Hb_080601_020--Hb_001163_040 Hb_007545_050 Hb_007545_050 Hb_000994_110--Hb_007545_050 Hb_182964_010 Hb_182964_010 Hb_000994_110--Hb_182964_010 Hb_006995_040 Hb_006995_040 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.7625 23.7958 50.9104 748.269 80.2504 359.616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
332.004 516.576 117.071 148.463 19.9425

CAGE analysis