Hb_001233_050

Information

Type -
Description -
Location Contig1233: 150763-153250
Sequence    

Annotation

kegg
ID rcu:RCOM_1272340
description Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative (EC:1.14.13.81)
nr
ID XP_002523677.1
description Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q945B7
description Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1
trembl
ID B9SCF8
description Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast, putative OS=Ricinus communis GN=RCOM_1272340 PE=3 SV=1
Gene Ontology
ID GO:0009534
description magnesium-protoporphyrin ix monomethyl ester

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07092: 150775-153152 , PASA_asmbl_07093: 152298-152501
cDNA
(Sanger)
(ID:Location)		 014_F04.ab1: 150820-151093 , 025_A08.ab1: 150820-151881 , 028_C22.ab1: 150820-151686

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001233_050 0.0 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
2 Hb_001942_060 0.0353160981 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002805_200 0.0627407948 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
4 Hb_000210_030 0.0643251931 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
5 Hb_101133_030 0.0649075838 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
6 Hb_002078_280 0.0661481581 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
7 Hb_000821_030 0.0665211978 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
8 Hb_003651_030 0.0679382923 - - lyase, putative [Ricinus communis]
9 Hb_000281_120 0.0691670028 - - protein binding protein, putative [Ricinus communis]
10 Hb_000262_090 0.0704869665 - - Root phototropism protein, putative [Ricinus communis]
11 Hb_000749_140 0.0715702225 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
12 Hb_000340_280 0.0735304385 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002245_050 0.0741457666 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
14 Hb_002042_090 0.0771688772 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
15 Hb_003921_020 0.0775626408 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
16 Hb_003573_030 0.0777557254 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_004627_050 0.0793114545 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
18 Hb_000172_660 0.0825915803 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
19 Hb_000030_070 0.0827880713 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003683_170 0.083395419 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001233_050 Hb_001233_050 Hb_001942_060 Hb_001942_060 Hb_001233_050--Hb_001942_060 Hb_002805_200 Hb_002805_200 Hb_001233_050--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_001233_050--Hb_000210_030 Hb_101133_030 Hb_101133_030 Hb_001233_050--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001233_050--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001233_050--Hb_000821_030 Hb_000749_140 Hb_000749_140 Hb_001942_060--Hb_000749_140 Hb_001942_060--Hb_101133_030 Hb_001942_060--Hb_002078_280 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050 Hb_000281_120 Hb_000281_120 Hb_002805_200--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_002805_200--Hb_003651_030 Hb_000340_280 Hb_000340_280 Hb_002805_200--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_000262_090 Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_002818_110 Hb_002818_110 Hb_000210_030--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000210_030--Hb_001675_090 Hb_000210_030--Hb_000821_030 Hb_006573_110 Hb_006573_110 Hb_000210_030--Hb_006573_110 Hb_101133_030--Hb_000340_280 Hb_101133_030--Hb_000749_140 Hb_001014_240 Hb_001014_240 Hb_101133_030--Hb_001014_240 Hb_000359_050 Hb_000359_050 Hb_101133_030--Hb_000359_050 Hb_101133_030--Hb_003651_030 Hb_011716_140 Hb_011716_140 Hb_002078_280--Hb_011716_140 Hb_011512_100 Hb_011512_100 Hb_002078_280--Hb_011512_100 Hb_002078_280--Hb_004627_050 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_000821_030--Hb_000262_090 Hb_008013_020 Hb_008013_020 Hb_000821_030--Hb_008013_020 Hb_000821_030--Hb_006573_110 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104116 44.6322 1351.6 252.135 0.204389 0.190062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.402599 0.248873 0.0426198 14.1291 876.18

CAGE analysis