Hb_001234_080

Information

Type -
Description -
Location Contig1234: 131222-132177
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08880g
description hypothetical protein
nr
ID XP_009409935.1
description PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
swissprot
ID -
description -
trembl
ID A0A0A9GBX2
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0004725
description eyes absent homolog 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07120: 131056-142897
cDNA
(Sanger)
(ID:Location)		 036_M17.ab1: 131485-142897

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001234_080 0.0 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
2 Hb_028227_020 0.0726098372 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
3 Hb_000960_060 0.0785731265 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
4 Hb_001489_060 0.0803850277 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
5 Hb_009694_010 0.0813223288 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001512_060 0.0837108988 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
7 Hb_001564_130 0.0872804461 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001157_020 0.0875856438 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
9 Hb_005697_060 0.088649054 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
10 Hb_002739_050 0.0886549939 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
11 Hb_002253_100 0.0890027702 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
12 Hb_000030_180 0.089203459 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
13 Hb_005731_050 0.0898245317 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
14 Hb_006120_070 0.0911977074 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
15 Hb_006816_220 0.093087251 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
16 Hb_002534_150 0.0938074579 - - catalytic, putative [Ricinus communis]
17 Hb_010921_010 0.0942792429 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
18 Hb_007163_070 0.0962432987 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
19 Hb_001329_290 0.0962940177 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
20 Hb_000120_790 0.0967462394 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001234_080 Hb_001234_080 Hb_028227_020 Hb_028227_020 Hb_001234_080--Hb_028227_020 Hb_000960_060 Hb_000960_060 Hb_001234_080--Hb_000960_060 Hb_001489_060 Hb_001489_060 Hb_001234_080--Hb_001489_060 Hb_009694_010 Hb_009694_010 Hb_001234_080--Hb_009694_010 Hb_001512_060 Hb_001512_060 Hb_001234_080--Hb_001512_060 Hb_001564_130 Hb_001564_130 Hb_001234_080--Hb_001564_130 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_033594_120 Hb_033594_120 Hb_000960_060--Hb_033594_120 Hb_001828_190 Hb_001828_190 Hb_000960_060--Hb_001828_190 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160 Hb_063716_050 Hb_063716_050 Hb_001489_060--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_001489_060--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_001489_060--Hb_000056_200 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_009694_010--Hb_005697_060 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0225 3.08924 7.01722 7.08337 13.1848 9.22301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4554 17.891 6.16603 4.87047 6.51673

CAGE analysis