Hb_001234_100

Information

Type -
Description -
Location Contig1234: 133873-142957
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02660g
description hypothetical protein
nr
ID XP_012075915.1
description PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
swissprot
ID O95677
description Eyes absent homolog 4 OS=Homo sapiens GN=EYA4 PE=1 SV=2
trembl
ID A0A067KQT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11984 PE=4 SV=1
Gene Ontology
ID GO:0004725
description eyes absent homolog 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07120: 131056-142897
cDNA
(Sanger)
(ID:Location)		 036_M17.ab1: 131485-142897

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001234_100 0.0 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
2 Hb_000421_220 0.0678307609 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
3 Hb_025240_040 0.0769680949 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
4 Hb_003502_090 0.077680345 - - ATP synthase subunit d, putative [Ricinus communis]
5 Hb_003697_040 0.0798828513 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
6 Hb_001205_150 0.0852990386 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
7 Hb_000479_190 0.0857644398 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012799_160 0.0857975711 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
9 Hb_002183_060 0.0869636283 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
10 Hb_000066_080 0.0872649359 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
11 Hb_000477_060 0.0875782978 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_010174_020 0.0887217699 - - protein binding protein, putative [Ricinus communis]
13 Hb_003605_090 0.0891583097 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
14 Hb_033594_120 0.0897562336 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
15 Hb_002016_120 0.0900738233 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
16 Hb_001369_690 0.0907457213 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
17 Hb_001235_030 0.0914361631 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
18 Hb_001390_130 0.0931563672 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
19 Hb_003125_010 0.0937752707 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
20 Hb_000331_450 0.0960836606 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001234_100 Hb_001234_100 Hb_000421_220 Hb_000421_220 Hb_001234_100--Hb_000421_220 Hb_025240_040 Hb_025240_040 Hb_001234_100--Hb_025240_040 Hb_003502_090 Hb_003502_090 Hb_001234_100--Hb_003502_090 Hb_003697_040 Hb_003697_040 Hb_001234_100--Hb_003697_040 Hb_001205_150 Hb_001205_150 Hb_001234_100--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_001234_100--Hb_000479_190 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_008453_030 Hb_008453_030 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_000421_220--Hb_025240_040 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_003108_020 Hb_003108_020 Hb_003502_090--Hb_003108_020 Hb_003502_090--Hb_000479_190 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_000692_220 Hb_000692_220 Hb_001205_150--Hb_000692_220 Hb_010174_020 Hb_010174_020 Hb_001205_150--Hb_010174_020 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003108_020 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47398 3.70139 3.74836 10.7674 8.8782 11.9376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9774 16.5858 13.1104 7.01848 9.08731

CAGE analysis