Hb_001235_050

Information

Type -
Description -
Location Contig1235: 126224-128066
Sequence    

Annotation

kegg
ID rcu:RCOM_0415020
description hypothetical protein
nr
ID XP_010244827.1
description PREDICTED: proteasome activator subunit 4 [Nelumbo nucifera]
swissprot
ID F4JC97
description Proteasome activator subunit 4 OS=Arabidopsis thaliana GN=PA200 PE=2 SV=2
trembl
ID A0A067KJP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_050 0.0 - - PREDICTED: proteasome activator subunit 4 [Nelumbo nucifera]
2 Hb_006162_060 0.0646432906 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
3 Hb_134708_010 0.1910620475 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
4 Hb_030885_020 0.3064973239 - - -
5 Hb_041601_010 0.3065675833 - - -
6 Hb_000251_020 0.3079225351 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
7 Hb_005479_050 0.3180408828 - - -
8 Hb_007527_070 0.3201525293 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
9 Hb_006910_050 0.3224889289 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
10 Hb_138462_010 0.3241892911 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
11 Hb_000953_120 0.3273988896 - - -
12 Hb_011540_030 0.3335652542 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
13 Hb_047691_010 0.339191097 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
14 Hb_004033_020 0.3395408518 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
15 Hb_003455_010 0.3398856532 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
16 Hb_184541_010 0.3452480434 - - PREDICTED: selT-like protein [Jatropha curcas]
17 Hb_004125_070 0.3484485446 - - Glycolipid transfer protein, putative [Ricinus communis]
18 Hb_009083_030 0.3491258754 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
19 Hb_000025_080 0.3494633232 - - -
20 Hb_060585_010 0.3505590481 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001235_050 Hb_001235_050 Hb_006162_060 Hb_006162_060 Hb_001235_050--Hb_006162_060 Hb_134708_010 Hb_134708_010 Hb_001235_050--Hb_134708_010 Hb_030885_020 Hb_030885_020 Hb_001235_050--Hb_030885_020 Hb_041601_010 Hb_041601_010 Hb_001235_050--Hb_041601_010 Hb_000251_020 Hb_000251_020 Hb_001235_050--Hb_000251_020 Hb_005479_050 Hb_005479_050 Hb_001235_050--Hb_005479_050 Hb_006162_060--Hb_134708_010 Hb_006162_060--Hb_041601_010 Hb_000953_120 Hb_000953_120 Hb_006162_060--Hb_000953_120 Hb_006162_060--Hb_030885_020 Hb_006162_060--Hb_000251_020 Hb_000832_210 Hb_000832_210 Hb_134708_010--Hb_000832_210 Hb_011081_040 Hb_011081_040 Hb_134708_010--Hb_011081_040 Hb_004970_210 Hb_004970_210 Hb_134708_010--Hb_004970_210 Hb_001089_080 Hb_001089_080 Hb_134708_010--Hb_001089_080 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_004770_060 Hb_004770_060 Hb_030885_020--Hb_004770_060 Hb_005597_010 Hb_005597_010 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_041601_010--Hb_000953_120 Hb_041601_010--Hb_000251_020 Hb_000034_090 Hb_000034_090 Hb_041601_010--Hb_000034_090 Hb_162090_010 Hb_162090_010 Hb_041601_010--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_041601_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_041601_010--Hb_000025_080 Hb_000251_020--Hb_000953_120 Hb_004033_020 Hb_004033_020 Hb_000251_020--Hb_004033_020 Hb_022614_010 Hb_022614_010 Hb_000251_020--Hb_022614_010 Hb_000251_020--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000251_020--Hb_017014_020 Hb_080081_010 Hb_080081_010 Hb_005479_050--Hb_080081_010 Hb_000244_140 Hb_000244_140 Hb_005479_050--Hb_000244_140 Hb_001486_050 Hb_001486_050 Hb_005479_050--Hb_001486_050 Hb_006816_110 Hb_006816_110 Hb_005479_050--Hb_006816_110 Hb_000172_470 Hb_000172_470 Hb_005479_050--Hb_000172_470 Hb_001335_040 Hb_001335_040 Hb_005479_050--Hb_001335_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0313117 0.527081 0 0.177461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.132024 0.0921726 0

CAGE analysis