Hb_001235_070

Information

Type -
Description -
Location Contig1235: 139923-140585
Sequence    

Annotation

kegg
ID rcu:RCOM_1061420
description hypothetical protein
nr
ID XP_002528936.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07150: 138668-140766 , PASA_asmbl_07151: 138607-140766 , PASA_asmbl_07152: 138714-140766
cDNA
(Sanger)
(ID:Location)		 031_I01.ab1: 138668-140114

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005686_110 0.06742836 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
3 Hb_001369_050 0.0769592022 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
4 Hb_000371_080 0.0771833926 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
5 Hb_148209_120 0.0777370962 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
6 Hb_005398_030 0.0788047194 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
7 Hb_004595_020 0.08093295 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
8 Hb_005997_010 0.0855946721 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
9 Hb_003020_230 0.0864321007 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
10 Hb_000984_190 0.0894737424 - - -
11 Hb_100777_010 0.0900480396 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
12 Hb_000963_190 0.0908713831 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
13 Hb_000676_290 0.0916648995 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
14 Hb_004453_150 0.0925193606 - - BnaC02g13240D [Brassica napus]
15 Hb_025193_050 0.093328159 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
16 Hb_000087_020 0.0943401887 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
17 Hb_015057_010 0.0952835854 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
18 Hb_001718_100 0.0953308083 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_003086_020 0.0953836468 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
20 Hb_000300_610 0.0955553874 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001235_070 Hb_001235_070 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_005686_110--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_005686_110--Hb_001369_050 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_084849_020 Hb_084849_020 Hb_001369_050--Hb_084849_020 Hb_001718_100 Hb_001718_100 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_003050_230 Hb_003050_230 Hb_001369_050--Hb_003050_230 Hb_000371_080--Hb_009711_030 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_001824_070 Hb_001824_070 Hb_000371_080--Hb_001824_070 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_148209_120--Hb_003020_230 Hb_148209_120--Hb_005398_030 Hb_001691_210 Hb_001691_210 Hb_148209_120--Hb_001691_210 Hb_148209_120--Hb_005997_010 Hb_000120_590 Hb_000120_590 Hb_148209_120--Hb_000120_590 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_012515_010 Hb_012515_010 Hb_004595_020--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_004595_020--Hb_011139_020 Hb_000465_060 Hb_000465_060 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_025193_050 Hb_025193_050 Hb_004595_020--Hb_025193_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.617 30.8351 16.1711 39.9724 98.4159 212.65
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
239.019 178.754 114.762 68.8811 39.9056

CAGE analysis