Hb_001235_090

Information

Type -
Description -
Location Contig1235: 151982-152584
Sequence    

Annotation

kegg
ID csv:101212359
description uncharacterized LOC101212359
nr
ID XP_008387496.1
description PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0D2ZSS8
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07153: 152897-153434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_090 0.0 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
2 Hb_000545_160 0.1392508163 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
3 Hb_000120_690 0.1939501025 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
4 Hb_176472_010 0.2014172718 - - BnaC01g33060D [Brassica napus]
5 Hb_117807_030 0.2134846288 - - Protein MCM10 [Gossypium arboreum]
6 Hb_006907_090 0.2954652724 - - -
7 Hb_007975_040 0.3015792029 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
8 Hb_000191_010 0.3020233507 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000440_030 0.3434196332 - - 50 kDa protein [Hevea brasiliensis]
10 Hb_074108_010 0.3456698462 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_036537_010 0.3487299342 - - ATP binding protein, putative [Ricinus communis]
12 Hb_003025_070 0.3514049589 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
13 Hb_004316_090 0.3547408039 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
14 Hb_012399_010 0.3559968409 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_008835_010 0.3563790415 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
16 Hb_150851_010 0.3573203592 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_015970_010 0.3578922137 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_011671_060 0.3582336081 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
19 Hb_003760_040 0.3629813069 - - organic anion transporter, putative [Ricinus communis]
20 Hb_001060_080 0.3634855029 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001235_090 Hb_001235_090 Hb_000545_160 Hb_000545_160 Hb_001235_090--Hb_000545_160 Hb_000120_690 Hb_000120_690 Hb_001235_090--Hb_000120_690 Hb_176472_010 Hb_176472_010 Hb_001235_090--Hb_176472_010 Hb_117807_030 Hb_117807_030 Hb_001235_090--Hb_117807_030 Hb_006907_090 Hb_006907_090 Hb_001235_090--Hb_006907_090 Hb_007975_040 Hb_007975_040 Hb_001235_090--Hb_007975_040 Hb_000545_160--Hb_176472_010 Hb_000191_010 Hb_000191_010 Hb_000545_160--Hb_000191_010 Hb_000545_160--Hb_117807_030 Hb_000545_160--Hb_000120_690 Hb_000398_050 Hb_000398_050 Hb_000545_160--Hb_000398_050 Hb_004316_090 Hb_004316_090 Hb_000120_690--Hb_004316_090 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_000120_690--Hb_176472_010 Hb_176472_010--Hb_117807_030 Hb_034905_010 Hb_034905_010 Hb_176472_010--Hb_034905_010 Hb_036537_010 Hb_036537_010 Hb_176472_010--Hb_036537_010 Hb_117807_030--Hb_034905_010 Hb_117807_030--Hb_000191_010 Hb_117807_030--Hb_000120_690 Hb_015475_010 Hb_015475_010 Hb_006907_090--Hb_015475_010 Hb_001060_080 Hb_001060_080 Hb_006907_090--Hb_001060_080 Hb_152362_010 Hb_152362_010 Hb_006907_090--Hb_152362_010 Hb_006907_090--Hb_000120_690 Hb_006788_080 Hb_006788_080 Hb_006907_090--Hb_006788_080 Hb_000440_030 Hb_000440_030 Hb_007975_040--Hb_000440_030 Hb_154340_010 Hb_154340_010 Hb_007975_040--Hb_154340_010 Hb_007975_040--Hb_004316_090 Hb_074238_010 Hb_074238_010 Hb_007975_040--Hb_074238_010 Hb_000226_100 Hb_000226_100 Hb_007975_040--Hb_000226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.146438 0 0.177605 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.551492 0.0322949 0

CAGE analysis