Hb_001235_110

Information

Type -
Description -
Location Contig1235: 156703-166818
Sequence    

Annotation

kegg
ID rcu:RCOM_1061150
description vesicle-associated membrane protein, putative
nr
ID XP_012069970.1
description PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
swissprot
ID Q9SHC8
description Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1
trembl
ID A0A067KY14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03394 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07156: 156740-166793 , PASA_asmbl_07157: 162327-162531 , PASA_asmbl_07158: 163571-163830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_110 0.0 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
2 Hb_000069_700 0.0821488602 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
3 Hb_001172_120 0.0875826836 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
4 Hb_000330_070 0.1005147638 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
5 Hb_000802_100 0.1094112173 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
6 Hb_116349_110 0.1144011307 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
7 Hb_000975_320 0.1152968749 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
8 Hb_000567_410 0.1175570697 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
9 Hb_006478_160 0.1179575473 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
10 Hb_001956_070 0.1180800991 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
11 Hb_000563_250 0.1202000642 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
12 Hb_001314_040 0.1216519465 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
13 Hb_001726_040 0.1216657554 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
14 Hb_001157_010 0.1220067557 - - deoxyhypusine synthase, putative [Ricinus communis]
15 Hb_005496_010 0.1221900973 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
16 Hb_000115_230 0.1222527462 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_000997_190 0.1234457055 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
18 Hb_003326_020 0.1250890974 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
19 Hb_000645_140 0.1257871795 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
20 Hb_001633_030 0.1258385437 - - -

Gene co-expression network

sample Hb_001235_110 Hb_001235_110 Hb_000069_700 Hb_000069_700 Hb_001235_110--Hb_000069_700 Hb_001172_120 Hb_001172_120 Hb_001235_110--Hb_001172_120 Hb_000330_070 Hb_000330_070 Hb_001235_110--Hb_000330_070 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_000975_320 Hb_000975_320 Hb_001235_110--Hb_000975_320 Hb_000069_700--Hb_001172_120 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_002811_080 Hb_002811_080 Hb_000330_070--Hb_002811_080 Hb_005496_010 Hb_005496_010 Hb_000330_070--Hb_005496_010 Hb_000330_070--Hb_000567_410 Hb_003326_020 Hb_003326_020 Hb_000330_070--Hb_003326_020 Hb_000645_140 Hb_000645_140 Hb_000330_070--Hb_000645_140 Hb_001314_040 Hb_001314_040 Hb_000802_100--Hb_001314_040 Hb_002876_120 Hb_002876_120 Hb_000802_100--Hb_002876_120 Hb_001157_010 Hb_001157_010 Hb_000802_100--Hb_001157_010 Hb_000530_070 Hb_000530_070 Hb_000802_100--Hb_000530_070 Hb_003579_030 Hb_003579_030 Hb_000802_100--Hb_003579_030 Hb_003581_260 Hb_003581_260 Hb_000802_100--Hb_003581_260 Hb_116349_110--Hb_000645_140 Hb_001512_050 Hb_001512_050 Hb_116349_110--Hb_001512_050 Hb_002588_010 Hb_002588_010 Hb_116349_110--Hb_002588_010 Hb_116349_110--Hb_000975_320 Hb_116349_110--Hb_002811_080 Hb_000906_040 Hb_000906_040 Hb_116349_110--Hb_000906_040 Hb_012368_020 Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_000975_320--Hb_000906_040 Hb_000975_320--Hb_002811_080 Hb_005511_160 Hb_005511_160 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8874 29.7056 54.6732 35.0067 29.4809 20.1613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.5022 186.782 119.236 19.2831 26.3585

CAGE analysis