Hb_001235_120

Information

Type -
Description -
Location Contig1235: 176833-178931
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15880g
description hypothetical protein
nr
ID KDP39864.1
description hypothetical protein JCGZ_03395 [Jatropha curcas]
swissprot
ID F4JYJ3
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana GN=SFH11 PE=3 SV=1
trembl
ID A0A067L6Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03395 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_120 0.0 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
2 Hb_006920_020 0.1205283407 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_001289_070 0.1372400628 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_008001_030 0.1442812424 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
5 Hb_008461_060 0.148171695 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
6 Hb_000251_120 0.1490177909 - - O-acetyltransferase, putative [Ricinus communis]
7 Hb_000367_080 0.1506165244 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
8 Hb_003090_190 0.1526585286 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
9 Hb_001976_100 0.1531097206 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
10 Hb_002613_040 0.1533336171 - - phosphate translocator-related family protein [Populus trichocarpa]
11 Hb_000392_540 0.1533922907 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
12 Hb_158092_050 0.1552075287 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
13 Hb_001514_050 0.1567049944 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
14 Hb_000000_290 0.1567377908 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
15 Hb_002973_050 0.1572369951 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
16 Hb_002400_300 0.1590230426 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
17 Hb_001001_070 0.1593504788 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
18 Hb_002119_110 0.1606019225 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
19 Hb_000963_120 0.1607930647 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
20 Hb_005000_150 0.1608210527 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001235_120 Hb_001235_120 Hb_006920_020 Hb_006920_020 Hb_001235_120--Hb_006920_020 Hb_001289_070 Hb_001289_070 Hb_001235_120--Hb_001289_070 Hb_008001_030 Hb_008001_030 Hb_001235_120--Hb_008001_030 Hb_008461_060 Hb_008461_060 Hb_001235_120--Hb_008461_060 Hb_000251_120 Hb_000251_120 Hb_001235_120--Hb_000251_120 Hb_000367_080 Hb_000367_080 Hb_001235_120--Hb_000367_080 Hb_006920_020--Hb_001289_070 Hb_000176_050 Hb_000176_050 Hb_006920_020--Hb_000176_050 Hb_002400_300 Hb_002400_300 Hb_006920_020--Hb_002400_300 Hb_000122_230 Hb_000122_230 Hb_006920_020--Hb_000122_230 Hb_002925_060 Hb_002925_060 Hb_006920_020--Hb_002925_060 Hb_001408_200 Hb_001408_200 Hb_006920_020--Hb_001408_200 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_003152_020 Hb_003152_020 Hb_001289_070--Hb_003152_020 Hb_000813_070 Hb_000813_070 Hb_001289_070--Hb_000813_070 Hb_002151_070 Hb_002151_070 Hb_001289_070--Hb_002151_070 Hb_000311_100 Hb_000311_100 Hb_008001_030--Hb_000311_100 Hb_000020_180 Hb_000020_180 Hb_008001_030--Hb_000020_180 Hb_001366_360 Hb_001366_360 Hb_008001_030--Hb_001366_360 Hb_001712_030 Hb_001712_030 Hb_008001_030--Hb_001712_030 Hb_005827_020 Hb_005827_020 Hb_008001_030--Hb_005827_020 Hb_003090_190 Hb_003090_190 Hb_008001_030--Hb_003090_190 Hb_008461_060--Hb_002151_070 Hb_008461_060--Hb_001289_070 Hb_002081_020 Hb_002081_020 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_008461_060--Hb_000813_070 Hb_001001_070 Hb_001001_070 Hb_008461_060--Hb_001001_070 Hb_000251_120--Hb_001001_070 Hb_000108_180 Hb_000108_180 Hb_000251_120--Hb_000108_180 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_003177_040 Hb_003177_040 Hb_000251_120--Hb_003177_040 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_000928_200 Hb_000928_200 Hb_000367_080--Hb_000928_200 Hb_000367_080--Hb_000392_540 Hb_010968_030 Hb_010968_030 Hb_000367_080--Hb_010968_030 Hb_011224_150 Hb_011224_150 Hb_000367_080--Hb_011224_150 Hb_000856_030 Hb_000856_030 Hb_000367_080--Hb_000856_030 Hb_000367_080--Hb_000251_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.321598 0.290382 2.25683 0 0.0349359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0413119 0 0.120809 0.156256 2.08305

CAGE analysis