Hb_001235_130

Information

Type -
Description -
Location Contig1235: 180191-184424
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07161: 182798-183193 , PASA_asmbl_07162: 183424-185298 , PASA_asmbl_07163: 183229-184048 , PASA_asmbl_07164: 183348-183554 , PASA_asmbl_07165: 183736-184137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_130 0.0 - - -
2 Hb_011174_080 0.0783099438 - - PREDICTED: sulfite oxidase [Jatropha curcas]
3 Hb_000256_160 0.0829717197 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
4 Hb_007229_050 0.0857820482 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
5 Hb_005854_040 0.0875574779 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005588_120 0.0905781421 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009535_030 0.0913503577 - - CP2 [Hevea brasiliensis]
8 Hb_004030_060 0.096477157 - - receptor protein kinase zmpk1, putative [Ricinus communis]
9 Hb_006185_030 0.097530656 - - threonine synthase, putative [Ricinus communis]
10 Hb_000125_180 0.0982345067 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
11 Hb_001473_170 0.0984946965 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
12 Hb_000157_140 0.1005868541 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_002805_090 0.1034606211 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_000540_100 0.1070723328 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
15 Hb_004129_010 0.1090761356 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_029879_120 0.1110724886 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002311_130 0.1115865676 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
18 Hb_002235_310 0.1125854599 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
19 Hb_000007_410 0.1150147398 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
20 Hb_098533_010 0.1154144117 - - hypothetical protein L484_003492 [Morus notabilis]

Gene co-expression network

sample Hb_001235_130 Hb_001235_130 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_000256_160 Hb_000256_160 Hb_001235_130--Hb_000256_160 Hb_007229_050 Hb_007229_050 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_000157_140 Hb_000157_140 Hb_011174_080--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_011174_080--Hb_002805_090 Hb_011174_080--Hb_000256_160 Hb_029879_120 Hb_029879_120 Hb_011174_080--Hb_029879_120 Hb_001702_050 Hb_001702_050 Hb_011174_080--Hb_001702_050 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_007229_050--Hb_004129_010 Hb_098533_010 Hb_098533_010 Hb_007229_050--Hb_098533_010 Hb_007229_050--Hb_000157_140 Hb_007229_050--Hb_000256_160 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_007317_020 Hb_007317_020 Hb_005854_040--Hb_007317_020 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020 Hb_005588_120--Hb_004129_010 Hb_000416_060 Hb_000416_060 Hb_005588_120--Hb_000416_060 Hb_132840_030 Hb_132840_030 Hb_005588_120--Hb_132840_030 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323256 1.98152 1.67731 2.69518 0.319221 0.682232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.443823 0.476217 0.573415 2.93396 3.22964

CAGE analysis