Hb_001235_150

Information

Type -
Description -
Location Contig1235: 191554-202357
Sequence    

Annotation

kegg
ID rcu:RCOM_1060980
description Chaperone protein dnaJ, putative
nr
ID XP_012069976.1
description PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
swissprot
ID Q39079
description Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2
trembl
ID A0A067KUQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03398 PE=4 SV=1
Gene Ontology
ID GO:0009536
description chaperone protein dnaj 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07171: 201625-201968 , PASA_asmbl_07172: 192648-202033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_150 0.0 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
2 Hb_000006_040 0.0673415968 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_033642_090 0.0743766079 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004254_090 0.0751123725 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
5 Hb_001357_250 0.0775181597 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
6 Hb_000165_040 0.078106826 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
7 Hb_000696_230 0.0786851307 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_002686_030 0.0796216746 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
9 Hb_000589_120 0.0801181593 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
10 Hb_000441_120 0.0816605109 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001408_140 0.0833896681 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
12 Hb_000041_110 0.0838607247 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
13 Hb_123915_040 0.0839119871 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
14 Hb_001946_290 0.0839290598 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
15 Hb_001723_020 0.0853875148 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
16 Hb_017862_020 0.0857044032 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
17 Hb_000731_270 0.0858432197 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
18 Hb_002784_020 0.0866769929 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
19 Hb_032202_140 0.0872419365 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
20 Hb_003464_090 0.0873009024 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_150 Hb_001235_150 Hb_000006_040 Hb_000006_040 Hb_001235_150--Hb_000006_040 Hb_033642_090 Hb_033642_090 Hb_001235_150--Hb_033642_090 Hb_004254_090 Hb_004254_090 Hb_001235_150--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_001235_150--Hb_001357_250 Hb_000165_040 Hb_000165_040 Hb_001235_150--Hb_000165_040 Hb_000696_230 Hb_000696_230 Hb_001235_150--Hb_000696_230 Hb_000006_040--Hb_000165_040 Hb_000006_040--Hb_004254_090 Hb_183510_020 Hb_183510_020 Hb_000006_040--Hb_183510_020 Hb_000006_040--Hb_033642_090 Hb_005867_070 Hb_005867_070 Hb_000006_040--Hb_005867_070 Hb_033642_090--Hb_001357_250 Hb_000907_110 Hb_000907_110 Hb_033642_090--Hb_000907_110 Hb_002784_020 Hb_002784_020 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_123915_040 Hb_123915_040 Hb_033642_090--Hb_123915_040 Hb_033642_090--Hb_000696_230 Hb_000138_100 Hb_000138_100 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_001357_250--Hb_123915_040 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_000165_040--Hb_005867_070 Hb_000441_120 Hb_000441_120 Hb_000165_040--Hb_000441_120 Hb_000935_010 Hb_000935_010 Hb_000165_040--Hb_000935_010 Hb_000174_170 Hb_000174_170 Hb_000165_040--Hb_000174_170 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54068 7.19297 6.78852 3.64073 7.8587 5.71674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27862 8.24523 6.99061 8.92093 5.71603

CAGE analysis