Hb_001235_160

Information

Type -
Description -
Location Contig1235: 203589-203951
Sequence    

Annotation

kegg
ID rcu:RCOM_1060970
description hypothetical protein
nr
ID XP_002528923.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1060970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001386_100 0.0965544046 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
3 Hb_008250_020 0.1362612729 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
4 Hb_001776_130 0.1368632844 - - metallothionein [Hevea brasiliensis]
5 Hb_002095_050 0.1489522383 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
6 Hb_000320_040 0.1500166395 - - ATP binding protein, putative [Ricinus communis]
7 Hb_006153_010 0.153072377 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
8 Hb_000809_140 0.1545180869 - - hypothetical protein JCGZ_12354 [Jatropha curcas]
9 Hb_003688_220 0.1606913955 - - unknown [Populus trichocarpa]
10 Hb_002897_010 0.1619178037 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
11 Hb_000343_020 0.1632102565 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
12 Hb_004712_090 0.166144784 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
13 Hb_000308_010 0.166780028 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
14 Hb_002463_050 0.1680487515 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001769_120 0.1691000037 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
16 Hb_009339_040 0.170165969 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002874_120 0.1726582746 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
18 Hb_014361_170 0.1747970134 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
19 Hb_000996_040 0.1762773288 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
20 Hb_002078_230 0.1771366479 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_160 Hb_001235_160 Hb_001386_100 Hb_001386_100 Hb_001235_160--Hb_001386_100 Hb_008250_020 Hb_008250_020 Hb_001235_160--Hb_008250_020 Hb_001776_130 Hb_001776_130 Hb_001235_160--Hb_001776_130 Hb_002095_050 Hb_002095_050 Hb_001235_160--Hb_002095_050 Hb_000320_040 Hb_000320_040 Hb_001235_160--Hb_000320_040 Hb_006153_010 Hb_006153_010 Hb_001235_160--Hb_006153_010 Hb_000809_140 Hb_000809_140 Hb_001386_100--Hb_000809_140 Hb_000506_100 Hb_000506_100 Hb_001386_100--Hb_000506_100 Hb_000343_020 Hb_000343_020 Hb_001386_100--Hb_000343_020 Hb_002874_120 Hb_002874_120 Hb_001386_100--Hb_002874_120 Hb_001386_100--Hb_008250_020 Hb_008250_020--Hb_006153_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_000260_610 Hb_000260_610 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050 Hb_000018_090 Hb_000018_090 Hb_001776_130--Hb_000018_090 Hb_002995_010 Hb_002995_010 Hb_001776_130--Hb_002995_010 Hb_005834_050 Hb_005834_050 Hb_001776_130--Hb_005834_050 Hb_003759_040 Hb_003759_040 Hb_001776_130--Hb_003759_040 Hb_003688_220 Hb_003688_220 Hb_001776_130--Hb_003688_220 Hb_009907_020 Hb_009907_020 Hb_001776_130--Hb_009907_020 Hb_002095_050--Hb_001776_130 Hb_004306_130 Hb_004306_130 Hb_002095_050--Hb_004306_130 Hb_005993_030 Hb_005993_030 Hb_002095_050--Hb_005993_030 Hb_000416_190 Hb_000416_190 Hb_002095_050--Hb_000416_190 Hb_003687_040 Hb_003687_040 Hb_002095_050--Hb_003687_040 Hb_014361_170 Hb_014361_170 Hb_002095_050--Hb_014361_170 Hb_000320_040--Hb_003688_220 Hb_001638_120 Hb_001638_120 Hb_000320_040--Hb_001638_120 Hb_002085_090 Hb_002085_090 Hb_000320_040--Hb_002085_090 Hb_007130_020 Hb_007130_020 Hb_000320_040--Hb_007130_020 Hb_000002_370 Hb_000002_370 Hb_000320_040--Hb_000002_370 Hb_003119_040 Hb_003119_040 Hb_006153_010--Hb_003119_040 Hb_000878_120 Hb_000878_120 Hb_006153_010--Hb_000878_120 Hb_006153_010--Hb_000260_610 Hb_000193_060 Hb_000193_060 Hb_006153_010--Hb_000193_060 Hb_015037_010 Hb_015037_010 Hb_006153_010--Hb_015037_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.87806 4.09307 11.7198 4.47403 0.384043 0.0934801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241967 0 0 2.33403 1.61146

CAGE analysis