Hb_001235_200

Information

Type -
Description -
Location Contig1235: 236585-242865
Sequence    

Annotation

kegg
ID rcu:RCOM_1060520
description hypothetical protein
nr
ID XP_002528918.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSE9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1060520 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna helicase ino80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07177: 236459-242825
cDNA
(Sanger)
(ID:Location)		 002_I09.ab1: 242185-242813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001599_030 0.056240834 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
3 Hb_000714_050 0.0579465143 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
4 Hb_000035_040 0.0629620947 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_010381_060 0.0629785565 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_000320_200 0.0658427167 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
7 Hb_007558_120 0.068524567 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_006449_050 0.0689039217 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
9 Hb_000329_090 0.0692050264 - - arginase, putative [Ricinus communis]
10 Hb_002893_150 0.0694268393 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
11 Hb_000329_130 0.0694627775 - - beta-tubulin cofactor d, putative [Ricinus communis]
12 Hb_000640_320 0.0695389408 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
13 Hb_000531_090 0.0696670337 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
14 Hb_002235_160 0.0714548274 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
15 Hb_010193_050 0.0731002135 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002221_050 0.0742718415 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
17 Hb_000789_080 0.0745304798 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
18 Hb_002749_110 0.0762905447 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
19 Hb_008143_030 0.0772428396 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
20 Hb_000794_050 0.0773045382 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_200 Hb_001235_200 Hb_001599_030 Hb_001599_030 Hb_001235_200--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_001235_200--Hb_000714_050 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_010381_060 Hb_010381_060 Hb_001235_200--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_000714_050--Hb_010381_060 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_002652_040 Hb_002652_040 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99618 4.1177 3.23624 2.89536 7.58205 7.70606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43298 2.57424 3.36228 3.90395 3.71601

CAGE analysis