Hb_001235_230

Information

Type -
Description -
Location Contig1235: 269918-282007
Sequence    

Annotation

kegg
ID rcu:RCOM_1060300
description hypothetical protein
nr
ID XP_012069984.1
description PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
swissprot
ID Q9FGK9
description Protein transport protein SEC16A homolog OS=Arabidopsis thaliana GN=MAG5 PE=1 SV=1
trembl
ID A0A067L6Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03405 PE=4 SV=1
Gene Ontology
ID GO:0000139
description protein transport protein sec16b homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07182: 270030-279895 , PASA_asmbl_07184: 280811-281854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_230 0.0 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
2 Hb_011202_020 0.0461788901 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
3 Hb_000261_030 0.0556917656 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
4 Hb_000176_130 0.0561870962 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
5 Hb_002044_170 0.0595302408 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
6 Hb_005357_260 0.0669811935 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
7 Hb_000035_410 0.067060568 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
8 Hb_000406_020 0.0672758743 - - -
9 Hb_000960_100 0.0673517898 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
10 Hb_003124_160 0.0673697827 - - dynamin, putative [Ricinus communis]
11 Hb_003284_030 0.0685417786 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
12 Hb_000176_100 0.0689442612 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
13 Hb_032920_130 0.070999332 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
14 Hb_000949_010 0.0722760412 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
15 Hb_030627_060 0.0727929508 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_001401_060 0.0729797723 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
17 Hb_000174_290 0.0731047145 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
18 Hb_011689_030 0.0743063454 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
19 Hb_000395_070 0.0750611836 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
20 Hb_000740_100 0.0761281843 - - calpain, putative [Ricinus communis]

Gene co-expression network

sample Hb_001235_230 Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_011202_020--Hb_005357_260 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_000035_410 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_000176_130--Hb_003124_160 Hb_000176_130--Hb_011202_020 Hb_000176_130--Hb_000261_030 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000035_410 Hb_011689_030 Hb_011689_030 Hb_005357_260--Hb_011689_030 Hb_000176_100 Hb_000176_100 Hb_005357_260--Hb_000176_100 Hb_005357_260--Hb_005402_040 Hb_000665_230 Hb_000665_230 Hb_005357_260--Hb_000665_230 Hb_005357_260--Hb_003124_160 Hb_000035_410--Hb_032920_130 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6694 19.4331 8.74075 11.8609 18.4049 16.5793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54306 4.71452 9.67349 13.3194 15.5088

CAGE analysis