Hb_001238_050

Information

Type -
Description -
Location Contig1238: 89490-91642
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001238_050 0.0 - - -
2 Hb_004306_070 0.1908729196 - - hypothetical protein 0_18789_01, partial [Pinus taeda]
3 Hb_000424_250 0.2285139591 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
4 Hb_000162_040 0.2326483733 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
5 Hb_034482_020 0.2333441105 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000326_040 0.236772638 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
7 Hb_000816_130 0.2382530652 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
8 Hb_010142_070 0.2386370143 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
9 Hb_004970_220 0.2391550668 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
10 Hb_000576_010 0.2406991188 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
11 Hb_030736_010 0.2419092711 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000062_350 0.2455126168 - - amino acid transporter, putative [Ricinus communis]
13 Hb_012508_030 0.247572844 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
14 Hb_000059_360 0.2489784956 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
15 Hb_026549_020 0.2536163543 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_003016_020 0.2547249866 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
17 Hb_000317_030 0.2547850747 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
18 Hb_001633_170 0.2550011826 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_007304_040 0.2556916366 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
20 Hb_005843_030 0.2576489949 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]

Gene co-expression network

sample Hb_001238_050 Hb_001238_050 Hb_004306_070 Hb_004306_070 Hb_001238_050--Hb_004306_070 Hb_000424_250 Hb_000424_250 Hb_001238_050--Hb_000424_250 Hb_000162_040 Hb_000162_040 Hb_001238_050--Hb_000162_040 Hb_034482_020 Hb_034482_020 Hb_001238_050--Hb_034482_020 Hb_000326_040 Hb_000326_040 Hb_001238_050--Hb_000326_040 Hb_000816_130 Hb_000816_130 Hb_001238_050--Hb_000816_130 Hb_000270_320 Hb_000270_320 Hb_004306_070--Hb_000270_320 Hb_067188_010 Hb_067188_010 Hb_004306_070--Hb_067188_010 Hb_030736_010 Hb_030736_010 Hb_004306_070--Hb_030736_010 Hb_004306_070--Hb_000162_040 Hb_004306_050 Hb_004306_050 Hb_004306_070--Hb_004306_050 Hb_001246_090 Hb_001246_090 Hb_000424_250--Hb_001246_090 Hb_001184_090 Hb_001184_090 Hb_000424_250--Hb_001184_090 Hb_000576_010 Hb_000576_010 Hb_000424_250--Hb_000576_010 Hb_007576_040 Hb_007576_040 Hb_000424_250--Hb_007576_040 Hb_000494_020 Hb_000494_020 Hb_000424_250--Hb_000494_020 Hb_032264_110 Hb_032264_110 Hb_000424_250--Hb_032264_110 Hb_027402_070 Hb_027402_070 Hb_000162_040--Hb_027402_070 Hb_004306_060 Hb_004306_060 Hb_000162_040--Hb_004306_060 Hb_023292_010 Hb_023292_010 Hb_000162_040--Hb_023292_010 Hb_004128_180 Hb_004128_180 Hb_000162_040--Hb_004128_180 Hb_064997_010 Hb_064997_010 Hb_000162_040--Hb_064997_010 Hb_001633_170 Hb_001633_170 Hb_000162_040--Hb_001633_170 Hb_002028_150 Hb_002028_150 Hb_034482_020--Hb_002028_150 Hb_000976_430 Hb_000976_430 Hb_034482_020--Hb_000976_430 Hb_004116_140 Hb_004116_140 Hb_034482_020--Hb_004116_140 Hb_002374_100 Hb_002374_100 Hb_034482_020--Hb_002374_100 Hb_000621_070 Hb_000621_070 Hb_034482_020--Hb_000621_070 Hb_000815_070 Hb_000815_070 Hb_034482_020--Hb_000815_070 Hb_000926_020 Hb_000926_020 Hb_000326_040--Hb_000926_020 Hb_010174_080 Hb_010174_080 Hb_000326_040--Hb_010174_080 Hb_000094_280 Hb_000094_280 Hb_000326_040--Hb_000094_280 Hb_003862_050 Hb_003862_050 Hb_000326_040--Hb_003862_050 Hb_000000_210 Hb_000000_210 Hb_000326_040--Hb_000000_210 Hb_000025_030 Hb_000025_030 Hb_000326_040--Hb_000025_030 Hb_000990_080 Hb_000990_080 Hb_000816_130--Hb_000990_080 Hb_003016_020 Hb_003016_020 Hb_000816_130--Hb_003016_020 Hb_000816_130--Hb_000576_010 Hb_116349_160 Hb_116349_160 Hb_000816_130--Hb_116349_160 Hb_000307_140 Hb_000307_140 Hb_000816_130--Hb_000307_140 Hb_033843_010 Hb_033843_010 Hb_000816_130--Hb_033843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116734 0 0.186457 0.0458855 0.0863091 0.152919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106801 0.0839296 0.29191 0.103498 0

CAGE analysis