Hb_001240_010

Information

Type -
Description -
Location Contig1240: 5242-8826
Sequence    

Annotation

kegg
ID rcu:RCOM_0628520
description hydrolase, acting on ester bonds, putative
nr
ID XP_012072278.1
description PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
swissprot
ID A1SJC8
description Putative Holliday junction resolvase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1
trembl
ID A0A067KPF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1
Gene Ontology
ID GO:0003676
description acting on ester

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07296: 5201-8746 , PASA_asmbl_07297: 5452-7024
cDNA
(Sanger)
(ID:Location)		 017_P04.ab1: 7308-8746

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001240_010 0.0 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
2 Hb_000403_070 0.0826765639 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000107_150 0.0876771782 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
4 Hb_001575_060 0.0886071595 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
5 Hb_003050_250 0.0917441774 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
6 Hb_140627_010 0.0965180334 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011457_050 0.0992613556 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
8 Hb_003020_260 0.1013359173 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
9 Hb_004125_040 0.1014254493 - - -
10 Hb_001728_060 0.1023404522 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
11 Hb_002609_200 0.104861995 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_011689_120 0.1069445379 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
13 Hb_006846_150 0.1104265214 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002872_050 0.1112258739 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
15 Hb_021576_030 0.1115314504 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
16 Hb_007827_010 0.1202191227 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
17 Hb_002014_030 0.1210258283 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
18 Hb_000035_480 0.1235492975 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
19 Hb_000877_080 0.1244896937 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
20 Hb_000159_130 0.1263632131 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001240_010 Hb_001240_010 Hb_000403_070 Hb_000403_070 Hb_001240_010--Hb_000403_070 Hb_000107_150 Hb_000107_150 Hb_001240_010--Hb_000107_150 Hb_001575_060 Hb_001575_060 Hb_001240_010--Hb_001575_060 Hb_003050_250 Hb_003050_250 Hb_001240_010--Hb_003050_250 Hb_140627_010 Hb_140627_010 Hb_001240_010--Hb_140627_010 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_000403_070--Hb_140627_010 Hb_000403_070--Hb_001575_060 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_001575_060--Hb_003050_250 Hb_001575_060--Hb_001728_060 Hb_001575_060--Hb_000107_150 Hb_001892_070 Hb_001892_070 Hb_001575_060--Hb_001892_070 Hb_019113_020 Hb_019113_020 Hb_003050_250--Hb_019113_020 Hb_004125_040 Hb_004125_040 Hb_003050_250--Hb_004125_040 Hb_003050_250--Hb_001728_060 Hb_003050_250--Hb_000403_070 Hb_000035_480 Hb_000035_480 Hb_140627_010--Hb_000035_480 Hb_140627_010--Hb_000457_290 Hb_140627_010--Hb_006846_150 Hb_000392_550 Hb_000392_550 Hb_140627_010--Hb_000392_550 Hb_004324_270 Hb_004324_270 Hb_011457_050--Hb_004324_270 Hb_002408_020 Hb_002408_020 Hb_011457_050--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_000566_120 Hb_000566_120 Hb_011457_050--Hb_000566_120 Hb_002183_060 Hb_002183_060 Hb_011457_050--Hb_002183_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81634 1.33628 4.3431 4.72188 2.68609 3.82324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41497 11.7837 4.7252 3.46115 10.3664

CAGE analysis