Hb_001241_010

Information

Type -
Description -
Location Contig1241: 12624-34875
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07321: 12563-34878 , PASA_asmbl_07322: 12783-34878 , PASA_asmbl_07323: 13287-23620 , PASA_asmbl_07324: 32899-34872 , PASA_asmbl_07325: 24747-25847 , PASA_asmbl_07326: 24762-25180 , PASA_asmbl_07327: 13350-13676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001241_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004333_040 0.0680267024 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
3 Hb_000189_600 0.070376912 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
4 Hb_001408_110 0.072091316 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
5 Hb_000215_300 0.0729755748 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
6 Hb_183433_010 0.0746143282 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
7 Hb_000116_030 0.0761829872 - - PREDICTED: protein GRIP [Jatropha curcas]
8 Hb_007062_040 0.0767425383 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
9 Hb_021374_010 0.081107521 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
10 Hb_001856_180 0.0816558808 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_001584_350 0.0819769753 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
12 Hb_086063_020 0.0827191701 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
13 Hb_004037_020 0.082807086 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
14 Hb_003912_040 0.0847337475 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
15 Hb_000345_160 0.0853935287 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_001892_030 0.0882904318 - - PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]
17 Hb_000046_570 0.0884955294 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
18 Hb_000238_040 0.0890577116 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
19 Hb_002413_010 0.0891138189 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_002205_030 0.0902877275 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001241_010 Hb_001241_010 Hb_004333_040 Hb_004333_040 Hb_001241_010--Hb_004333_040 Hb_000189_600 Hb_000189_600 Hb_001241_010--Hb_000189_600 Hb_001408_110 Hb_001408_110 Hb_001241_010--Hb_001408_110 Hb_000215_300 Hb_000215_300 Hb_001241_010--Hb_000215_300 Hb_183433_010 Hb_183433_010 Hb_001241_010--Hb_183433_010 Hb_000116_030 Hb_000116_030 Hb_001241_010--Hb_000116_030 Hb_006189_020 Hb_006189_020 Hb_004333_040--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_004333_040--Hb_033312_040 Hb_004333_040--Hb_000189_600 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_000510_360 Hb_000510_360 Hb_004333_040--Hb_000510_360 Hb_004333_040--Hb_183433_010 Hb_000189_600--Hb_183433_010 Hb_000617_230 Hb_000617_230 Hb_000189_600--Hb_000617_230 Hb_001377_190 Hb_001377_190 Hb_000189_600--Hb_001377_190 Hb_001430_080 Hb_001430_080 Hb_000189_600--Hb_001430_080 Hb_000521_330 Hb_000521_330 Hb_000189_600--Hb_000521_330 Hb_024650_080 Hb_024650_080 Hb_001408_110--Hb_024650_080 Hb_000089_180 Hb_000089_180 Hb_001408_110--Hb_000089_180 Hb_004037_020 Hb_004037_020 Hb_001408_110--Hb_004037_020 Hb_007839_020 Hb_007839_020 Hb_001408_110--Hb_007839_020 Hb_010407_080 Hb_010407_080 Hb_001408_110--Hb_010407_080 Hb_004705_170 Hb_004705_170 Hb_000215_300--Hb_004705_170 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000345_160 Hb_000345_160 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_000215_300--Hb_004037_020 Hb_007472_070 Hb_007472_070 Hb_000215_300--Hb_007472_070 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230 Hb_000238_040 Hb_000238_040 Hb_000116_030--Hb_000238_040 Hb_001584_350 Hb_001584_350 Hb_000116_030--Hb_001584_350 Hb_000330_060 Hb_000330_060 Hb_000116_030--Hb_000330_060 Hb_001579_330 Hb_001579_330 Hb_000116_030--Hb_001579_330 Hb_002889_010 Hb_002889_010 Hb_000116_030--Hb_002889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3902 28.464 30.5593 30.1539 13.9573 20.8968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6625 15.0279 8.95048 25.2253 25.293

CAGE analysis