Hb_001241_020

Information

Type -
Description -
Location Contig1241: 38927-39850
Sequence    

Annotation

kegg
ID sly:101265754
description uncharacterized LOC101265754
nr
ID XP_012065099.1
description PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2U001
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G092500 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105628311

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07328: 38315-39661
cDNA
(Sanger)
(ID:Location)		 008_O16.ab1: 39019-39571 , 015_P16.ab1: 38982-39661 , 019_P22.ab1: 38718-39537 , 021_H18.ab1: 38763-39537 , 044_O03.ab1: 38766-39490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001241_020 0.0 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
2 Hb_000243_180 0.1084045029 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
3 Hb_011609_130 0.1124895174 - - -
4 Hb_001926_010 0.1160137595 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
5 Hb_006909_050 0.1207491804 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
6 Hb_000731_030 0.1236727767 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_000028_010 0.1279627803 - - cytochrome P450, putative [Ricinus communis]
8 Hb_088118_010 0.1320458624 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_001921_040 0.1326328145 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
10 Hb_003226_040 0.133666468 - - PREDICTED: endoglucanase 17 [Populus euphratica]
11 Hb_000436_110 0.1348041648 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
12 Hb_001123_340 0.1348311162 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
13 Hb_000282_010 0.1374780269 - - conserved hypothetical protein [Ricinus communis]
14 Hb_052530_010 0.1384945893 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
15 Hb_002235_260 0.1398235884 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_004117_060 0.1413141073 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
17 Hb_000816_080 0.143123651 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
18 Hb_089736_010 0.1441750285 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
19 Hb_008165_010 0.1457418299 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
20 Hb_000424_050 0.146516592 - - erecta, putative [Ricinus communis]

Gene co-expression network

sample Hb_001241_020 Hb_001241_020 Hb_000243_180 Hb_000243_180 Hb_001241_020--Hb_000243_180 Hb_011609_130 Hb_011609_130 Hb_001241_020--Hb_011609_130 Hb_001926_010 Hb_001926_010 Hb_001241_020--Hb_001926_010 Hb_006909_050 Hb_006909_050 Hb_001241_020--Hb_006909_050 Hb_000731_030 Hb_000731_030 Hb_001241_020--Hb_000731_030 Hb_000028_010 Hb_000028_010 Hb_001241_020--Hb_000028_010 Hb_003226_040 Hb_003226_040 Hb_000243_180--Hb_003226_040 Hb_004117_060 Hb_004117_060 Hb_000243_180--Hb_004117_060 Hb_002235_260 Hb_002235_260 Hb_000243_180--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_000243_180--Hb_001921_040 Hb_000243_180--Hb_006909_050 Hb_001677_070 Hb_001677_070 Hb_000243_180--Hb_001677_070 Hb_000732_110 Hb_000732_110 Hb_011609_130--Hb_000732_110 Hb_005162_120 Hb_005162_120 Hb_011609_130--Hb_005162_120 Hb_002639_170 Hb_002639_170 Hb_011609_130--Hb_002639_170 Hb_011609_130--Hb_000028_010 Hb_002799_120 Hb_002799_120 Hb_011609_130--Hb_002799_120 Hb_001926_010--Hb_001921_040 Hb_000282_010 Hb_000282_010 Hb_001926_010--Hb_000282_010 Hb_001926_010--Hb_002235_260 Hb_001123_340 Hb_001123_340 Hb_001926_010--Hb_001123_340 Hb_019762_030 Hb_019762_030 Hb_001926_010--Hb_019762_030 Hb_001926_010--Hb_004117_060 Hb_177533_010 Hb_177533_010 Hb_006909_050--Hb_177533_010 Hb_002045_020 Hb_002045_020 Hb_006909_050--Hb_002045_020 Hb_000023_030 Hb_000023_030 Hb_006909_050--Hb_000023_030 Hb_007558_060 Hb_007558_060 Hb_006909_050--Hb_007558_060 Hb_006909_050--Hb_000731_030 Hb_000505_030 Hb_000505_030 Hb_000731_030--Hb_000505_030 Hb_002079_100 Hb_002079_100 Hb_000731_030--Hb_002079_100 Hb_000152_200 Hb_000152_200 Hb_000731_030--Hb_000152_200 Hb_001519_080 Hb_001519_080 Hb_000731_030--Hb_001519_080 Hb_000731_030--Hb_007558_060 Hb_018663_010 Hb_018663_010 Hb_000028_010--Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_000028_010--Hb_010737_030 Hb_000051_130 Hb_000051_130 Hb_000028_010--Hb_000051_130 Hb_000496_100 Hb_000496_100 Hb_000028_010--Hb_000496_100 Hb_102900_010 Hb_102900_010 Hb_000028_010--Hb_102900_010 Hb_008165_010 Hb_008165_010 Hb_000028_010--Hb_008165_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0265542 1.49745 0.181393 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0476201 0 0 0.192673

CAGE analysis