Hb_001241_060

Information

Type -
Description -
Location Contig1241: 85856-86100
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001241_060 0.0 - - -
2 Hb_004429_040 0.0468850694 - - -
3 Hb_010024_010 0.0729807865 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_022593_060 0.0847374464 - - -
5 Hb_002490_040 0.0886092802 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
6 Hb_000563_290 0.1127311319 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
7 Hb_001206_070 0.1220373293 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000195_050 0.1465797721 - - -
9 Hb_001385_050 0.1573582727 - - catalytic, putative [Ricinus communis]
10 Hb_038675_010 0.1849330292 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
11 Hb_059069_010 0.186032131 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
12 Hb_001762_070 0.1948693714 - - -
13 Hb_004317_050 0.2003443095 - - -
14 Hb_011360_100 0.2023948757 - - -
15 Hb_000116_080 0.2090368273 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
16 Hb_004458_050 0.2160633196 - - -
17 Hb_005741_010 0.2206931934 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
18 Hb_098842_010 0.2225553735 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
19 Hb_000962_010 0.2292984438 - - -
20 Hb_012194_010 0.2329655839 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]

Gene co-expression network

sample Hb_001241_060 Hb_001241_060 Hb_004429_040 Hb_004429_040 Hb_001241_060--Hb_004429_040 Hb_010024_010 Hb_010024_010 Hb_001241_060--Hb_010024_010 Hb_022593_060 Hb_022593_060 Hb_001241_060--Hb_022593_060 Hb_002490_040 Hb_002490_040 Hb_001241_060--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_001241_060--Hb_000563_290 Hb_001206_070 Hb_001206_070 Hb_001241_060--Hb_001206_070 Hb_004429_040--Hb_002490_040 Hb_004429_040--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_004429_040--Hb_000195_050 Hb_004429_040--Hb_010024_010 Hb_004429_040--Hb_022593_060 Hb_010024_010--Hb_022593_060 Hb_010024_010--Hb_001206_070 Hb_001385_050 Hb_001385_050 Hb_010024_010--Hb_001385_050 Hb_000116_080 Hb_000116_080 Hb_010024_010--Hb_000116_080 Hb_022593_060--Hb_001206_070 Hb_022593_060--Hb_001385_050 Hb_022593_060--Hb_000116_080 Hb_002490_040--Hb_000563_290 Hb_002490_040--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_002490_040--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_040--Hb_059069_010 Hb_000563_290--Hb_000195_050 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_000563_290--Hb_011360_100 Hb_001206_070--Hb_000116_080 Hb_001206_070--Hb_001385_050 Hb_001125_020 Hb_001125_020 Hb_001206_070--Hb_001125_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79819 0 0 0 0 11.056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis