Hb_001241_090

Information

Type -
Description -
Location Contig1241: 121324-122817
Sequence    

Annotation

kegg
ID tcc:TCM_009557
description Gag protease polyprotein
nr
ID XP_012453639.1
description PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001241_090 0.0 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
2 Hb_140618_010 3.22891e-05 - - -
3 Hb_052600_010 0.0001202824 - - -
4 Hb_005396_140 0.0025325975 - - -
5 Hb_001105_080 0.0083143185 - - -
6 Hb_005834_030 0.0565040267 - - -
7 Hb_003675_010 0.0700394741 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
8 Hb_000956_140 0.0738391253 - - -
9 Hb_000270_820 0.0881911597 - - -
10 Hb_001534_020 0.1056637028 - - conserved hypothetical protein [Ricinus communis]
11 Hb_137268_010 0.1069764385 - - -
12 Hb_000083_190 0.138824526 - - low affinity nitrate transporter, partial [Triticum aestivum]
13 Hb_000510_380 0.1397729997 - - -
14 Hb_000482_130 0.1397778554 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_012543_020 0.1397821829 - - -
16 Hb_185616_010 0.1397891244 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_061463_010 0.1398261427 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_002130_010 0.1398389322 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
19 Hb_000098_160 0.1399029227 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003052_160 0.1399029227 - - -

Gene co-expression network

sample Hb_001241_090 Hb_001241_090 Hb_140618_010 Hb_140618_010 Hb_001241_090--Hb_140618_010 Hb_052600_010 Hb_052600_010 Hb_001241_090--Hb_052600_010 Hb_005396_140 Hb_005396_140 Hb_001241_090--Hb_005396_140 Hb_001105_080 Hb_001105_080 Hb_001241_090--Hb_001105_080 Hb_005834_030 Hb_005834_030 Hb_001241_090--Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_001241_090--Hb_003675_010 Hb_140618_010--Hb_052600_010 Hb_140618_010--Hb_005396_140 Hb_140618_010--Hb_001105_080 Hb_140618_010--Hb_005834_030 Hb_140618_010--Hb_003675_010 Hb_052600_010--Hb_005396_140 Hb_052600_010--Hb_001105_080 Hb_052600_010--Hb_005834_030 Hb_052600_010--Hb_003675_010 Hb_005396_140--Hb_001105_080 Hb_005396_140--Hb_005834_030 Hb_005396_140--Hb_003675_010 Hb_001105_080--Hb_005834_030 Hb_001105_080--Hb_003675_010 Hb_005834_030--Hb_003675_010 Hb_000270_820 Hb_000270_820 Hb_005834_030--Hb_000270_820 Hb_003675_010--Hb_000270_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135526 0.0533088 0 0 0

CAGE analysis