Hb_001242_010

Information

Type -
Description -
Location Contig1242: 31194-31448
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21760g
description hypothetical protein
nr
ID XP_002306717.1
description hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H7V5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_010 0.0 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
2 Hb_010377_020 0.2120249453 - - -
3 Hb_092995_020 0.2284189431 - - -
4 Hb_000110_390 0.2362430092 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
5 Hb_001268_320 0.2433743897 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
6 Hb_003050_030 0.2519959996 - - Calcyclin-binding protein, putative [Ricinus communis]
7 Hb_020712_050 0.2553964762 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
8 Hb_002092_030 0.3059951819 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
9 Hb_051055_010 0.314531183 - - -
10 Hb_083845_010 0.3159913846 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
11 Hb_009732_040 0.3221126527 - - hypothetical protein POPTR_0006s04880g [Populus trichocarpa]
12 Hb_001549_030 0.3414348538 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_003878_220 0.3493779606 - - vacuolar protein sorting, putative [Ricinus communis]
14 Hb_002311_060 0.3525990023 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
15 Hb_006153_180 0.356595757 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
16 Hb_007975_050 0.3601226511 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
17 Hb_000046_250 0.3609056277 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003360_050 0.3609283945 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_000143_020 0.3616545108 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
20 Hb_007672_030 0.3648067706 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_001242_010 Hb_001242_010 Hb_010377_020 Hb_010377_020 Hb_001242_010--Hb_010377_020 Hb_092995_020 Hb_092995_020 Hb_001242_010--Hb_092995_020 Hb_000110_390 Hb_000110_390 Hb_001242_010--Hb_000110_390 Hb_001268_320 Hb_001268_320 Hb_001242_010--Hb_001268_320 Hb_003050_030 Hb_003050_030 Hb_001242_010--Hb_003050_030 Hb_020712_050 Hb_020712_050 Hb_001242_010--Hb_020712_050 Hb_010377_020--Hb_001268_320 Hb_002092_030 Hb_002092_030 Hb_010377_020--Hb_002092_030 Hb_010377_020--Hb_000110_390 Hb_001894_180 Hb_001894_180 Hb_010377_020--Hb_001894_180 Hb_001329_030 Hb_001329_030 Hb_010377_020--Hb_001329_030 Hb_001549_030 Hb_001549_030 Hb_092995_020--Hb_001549_030 Hb_007125_010 Hb_007125_010 Hb_092995_020--Hb_007125_010 Hb_121461_020 Hb_121461_020 Hb_092995_020--Hb_121461_020 Hb_092995_020--Hb_003050_030 Hb_000143_020 Hb_000143_020 Hb_092995_020--Hb_000143_020 Hb_168319_020 Hb_168319_020 Hb_000110_390--Hb_168319_020 Hb_000110_390--Hb_001268_320 Hb_000110_390--Hb_002092_030 Hb_000110_390--Hb_001894_180 Hb_001268_320--Hb_002092_030 Hb_001268_320--Hb_001894_180 Hb_001804_030 Hb_001804_030 Hb_001268_320--Hb_001804_030 Hb_002301_110 Hb_002301_110 Hb_003050_030--Hb_002301_110 Hb_000032_460 Hb_000032_460 Hb_003050_030--Hb_000032_460 Hb_003878_220 Hb_003878_220 Hb_003050_030--Hb_003878_220 Hb_001472_110 Hb_001472_110 Hb_003050_030--Hb_001472_110 Hb_007975_050 Hb_007975_050 Hb_003050_030--Hb_007975_050 Hb_051055_010 Hb_051055_010 Hb_020712_050--Hb_051055_010 Hb_002793_080 Hb_002793_080 Hb_020712_050--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_020712_050--Hb_000733_150 Hb_020712_050--Hb_000110_390 Hb_000042_180 Hb_000042_180 Hb_020712_050--Hb_000042_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.236781 3.41959 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.80472 1.968 0

CAGE analysis