Hb_001242_040

Information

Type -
Description -
Location Contig1242: 46694-48671
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06560g
description POPTRDRAFT_816205; ONE-HELIX protein 2
nr
ID XP_011042890.1
description PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GT79
description ONE-HELIX protein 2 OS=Populus trichocarpa GN=POPTR_0002s06560g PE=4 SV=1
Gene Ontology
ID GO:0009535
description one-helix protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07336: 46737-48435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_040 0.0 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
2 Hb_028227_040 0.1047811666 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
3 Hb_005051_010 0.1064117765 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
4 Hb_005211_210 0.1092129167 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
5 Hb_008689_010 0.1135353803 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
6 Hb_000434_060 0.1143027935 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_010222_060 0.1146137052 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002193_080 0.1150057964 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_013394_120 0.1168916171 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
10 Hb_014700_030 0.1172305165 - - tryptophan synthase beta chain, putative [Ricinus communis]
11 Hb_003050_330 0.1203578087 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
12 Hb_001789_120 0.1219136872 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
13 Hb_000369_040 0.1223251443 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_031862_120 0.1226392099 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
15 Hb_000201_010 0.1237668427 - - unnamed protein product [Vitis vinifera]
16 Hb_003494_150 0.1240568309 - - Silicon transporter, putative [Ricinus communis]
17 Hb_008165_050 0.127525574 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_001269_240 0.130814581 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
19 Hb_004880_050 0.1313355458 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009522_020 0.1323802364 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001242_040 Hb_001242_040 Hb_028227_040 Hb_028227_040 Hb_001242_040--Hb_028227_040 Hb_005051_010 Hb_005051_010 Hb_001242_040--Hb_005051_010 Hb_005211_210 Hb_005211_210 Hb_001242_040--Hb_005211_210 Hb_008689_010 Hb_008689_010 Hb_001242_040--Hb_008689_010 Hb_000434_060 Hb_000434_060 Hb_001242_040--Hb_000434_060 Hb_010222_060 Hb_010222_060 Hb_001242_040--Hb_010222_060 Hb_000272_030 Hb_000272_030 Hb_028227_040--Hb_000272_030 Hb_000659_040 Hb_000659_040 Hb_028227_040--Hb_000659_040 Hb_006570_060 Hb_006570_060 Hb_028227_040--Hb_006570_060 Hb_003054_070 Hb_003054_070 Hb_028227_040--Hb_003054_070 Hb_013394_120 Hb_013394_120 Hb_028227_040--Hb_013394_120 Hb_001305_020 Hb_001305_020 Hb_005051_010--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_005051_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_005051_010--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_005051_010--Hb_032779_010 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_005051_010--Hb_000434_060 Hb_002193_080 Hb_002193_080 Hb_005211_210--Hb_002193_080 Hb_005211_210--Hb_008689_010 Hb_002043_070 Hb_002043_070 Hb_005211_210--Hb_002043_070 Hb_000201_010 Hb_000201_010 Hb_005211_210--Hb_000201_010 Hb_005675_070 Hb_005675_070 Hb_005211_210--Hb_005675_070 Hb_005211_210--Hb_000434_060 Hb_008689_010--Hb_002193_080 Hb_003008_020 Hb_003008_020 Hb_008689_010--Hb_003008_020 Hb_003050_330 Hb_003050_330 Hb_008689_010--Hb_003050_330 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_002168_070 Hb_002168_070 Hb_000434_060--Hb_002168_070 Hb_000434_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000434_060--Hb_009771_040 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040 Hb_010222_060--Hb_013394_120 Hb_010222_060--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_010222_060--Hb_001789_120 Hb_009522_020 Hb_009522_020 Hb_010222_060--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.274829 56.2816 43.6992 80.8966 0.148644 0.327074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35966 0.606147 2.82436 5.00655 93.919

CAGE analysis