Hb_001242_080

Information

Type -
Description -
Location Contig1242: 95379-99688
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06520g
description POPTRDRAFT_830142; transporter-related family protein
nr
ID XP_011042896.1
description PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID B9GT76
description Transporter-related family protein OS=Populus trichocarpa GN=POPTR_0002s06520g PE=4 SV=2
Gene Ontology
ID GO:0005338
description udp-galactose transporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07344: 95450-99493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_080 0.0 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
2 Hb_000120_770 0.0912570795 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002876_020 0.1040955914 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
4 Hb_001892_070 0.109518824 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
5 Hb_002392_010 0.1145165079 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
6 Hb_003106_100 0.1165171915 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
7 Hb_001575_060 0.1179893734 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
8 Hb_011249_020 0.1183506855 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
9 Hb_001307_030 0.1191054555 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
10 Hb_008642_030 0.1202799868 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
11 Hb_004257_010 0.1203282949 - - CMP-sialic acid transporter, putative [Ricinus communis]
12 Hb_000428_060 0.1226108689 - - malate dehydrogenase, putative [Ricinus communis]
13 Hb_000983_030 0.1241375965 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
14 Hb_000649_140 0.1242327499 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
15 Hb_001123_160 0.1256374765 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_008147_090 0.1275098739 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012244_010 0.1284770684 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
18 Hb_000032_370 0.1305549918 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
19 Hb_010560_050 0.1307528038 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
20 Hb_032920_070 0.1313640788 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001242_080 Hb_001242_080 Hb_000120_770 Hb_000120_770 Hb_001242_080--Hb_000120_770 Hb_002876_020 Hb_002876_020 Hb_001242_080--Hb_002876_020 Hb_001892_070 Hb_001892_070 Hb_001242_080--Hb_001892_070 Hb_002392_010 Hb_002392_010 Hb_001242_080--Hb_002392_010 Hb_003106_100 Hb_003106_100 Hb_001242_080--Hb_003106_100 Hb_001575_060 Hb_001575_060 Hb_001242_080--Hb_001575_060 Hb_000120_770--Hb_001575_060 Hb_000120_770--Hb_002876_020 Hb_001865_090 Hb_001865_090 Hb_000120_770--Hb_001865_090 Hb_000120_770--Hb_003106_100 Hb_004257_010 Hb_004257_010 Hb_000120_770--Hb_004257_010 Hb_002876_020--Hb_003106_100 Hb_000649_140 Hb_000649_140 Hb_002876_020--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_002876_020--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_002876_020--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_002876_020--Hb_001353_010 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_000403_070 Hb_000403_070 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_001892_070--Hb_000457_290 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_003106_100--Hb_000649_140 Hb_003106_100--Hb_001019_150 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_003050_250 Hb_003050_250 Hb_001575_060--Hb_003050_250 Hb_001575_060--Hb_000403_070 Hb_001728_060 Hb_001728_060 Hb_001575_060--Hb_001728_060 Hb_001240_010 Hb_001240_010 Hb_001575_060--Hb_001240_010 Hb_000107_150 Hb_000107_150 Hb_001575_060--Hb_000107_150 Hb_001575_060--Hb_001892_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.667637 0.337093 2.88753 5.78543 1.12622 1.51736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04997 5.04141 4.35925 3.7929 4.6616

CAGE analysis