Hb_001242_090

Information

Type -
Description -
Location Contig1242: 104780-106696
Sequence    

Annotation

kegg
ID vcn:VOLCADRAFT_61524
description hypothetical protein
nr
ID XP_007594167.1
description 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
swissprot
ID -
description -
trembl
ID K7LKW2
description Uncharacterized protein (Fragment) OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_090 0.0 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
2 Hb_003688_160 0.1835466691 - - Presenilin-like family protein [Populus trichocarpa]
3 Hb_073452_010 0.2054364965 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_003881_050 0.205819561 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
5 Hb_000251_090 0.2070652041 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
6 Hb_052689_010 0.2136908734 - - heat shock cognate protein [Solanum commersonii]
7 Hb_003688_170 0.2269946033 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
8 Hb_000422_120 0.2282722115 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
9 Hb_001545_210 0.2343329206 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
10 Hb_177179_010 0.2357000734 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
11 Hb_001135_280 0.2359055581 - - -
12 Hb_004103_030 0.2372058322 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004881_100 0.2381322937 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
14 Hb_054127_050 0.2398186689 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
15 Hb_146339_010 0.2480380959 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
16 Hb_004724_230 0.2557489208 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
17 Hb_000512_070 0.2585904698 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
18 Hb_001703_120 0.2598491692 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
19 Hb_004899_060 0.2631808439 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
20 Hb_002289_130 0.2635906095 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001242_090 Hb_001242_090 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_003688_160--Hb_052689_010 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010 Hb_000442_080 Hb_000442_080 Hb_073452_010--Hb_000442_080 Hb_000011_330 Hb_000011_330 Hb_073452_010--Hb_000011_330 Hb_073452_010--Hb_000251_090 Hb_002205_190 Hb_002205_190 Hb_073452_010--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_073452_010--Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_073452_010--Hb_000567_380 Hb_038011_010 Hb_038011_010 Hb_003881_050--Hb_038011_010 Hb_085863_020 Hb_085863_020 Hb_003881_050--Hb_085863_020 Hb_003881_050--Hb_073452_010 Hb_090497_010 Hb_090497_010 Hb_003881_050--Hb_090497_010 Hb_003881_050--Hb_003688_160 Hb_000251_090--Hb_002205_190 Hb_000251_090--Hb_000567_380 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_000251_090--Hb_008695_140 Hb_001916_070 Hb_001916_070 Hb_052689_010--Hb_001916_070 Hb_052689_010--Hb_000251_090 Hb_052689_010--Hb_089206_010 Hb_003032_020 Hb_003032_020 Hb_052689_010--Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_052689_010--Hb_007820_010 Hb_011063_020 Hb_011063_020 Hb_003688_170--Hb_011063_020 Hb_003688_170--Hb_003688_160 Hb_003688_170--Hb_000251_090 Hb_000160_030 Hb_000160_030 Hb_003688_170--Hb_000160_030 Hb_024404_010 Hb_024404_010 Hb_003688_170--Hb_024404_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54052 1.35365 2.07059 1.75322 6.9997 5.48513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566335 0.0636026 23.4922 8.28104 8.9312

CAGE analysis