Hb_001242_110

Information

Type -
Description -
Location Contig1242: 115712-118298
Sequence    

Annotation

kegg
ID rcu:RCOM_0961900
description 40S ribosomal protein S18, putative
nr
ID XP_002524340.1
description 40S ribosomal protein S18, putative [Ricinus communis]
swissprot
ID P34788
description 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1
trembl
ID M4F9X0
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037884 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07345: 115649-117849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_110 0.0 - - 40S ribosomal protein S18, putative [Ricinus communis]
2 Hb_148209_080 0.068096206 - - MED32, putative [Theobroma cacao]
3 Hb_000028_140 0.0698586852 - - surfeit locus protein, putative [Ricinus communis]
4 Hb_003996_020 0.0712338254 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000227_230 0.0818666596 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
6 Hb_015175_030 0.0831272667 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
7 Hb_027073_040 0.0843945545 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
8 Hb_002701_050 0.0869281263 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
9 Hb_004032_100 0.0915166305 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
10 Hb_001048_020 0.0918008494 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
11 Hb_000058_060 0.0922084558 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
12 Hb_033834_040 0.0923688796 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000274_020 0.0928788587 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
14 Hb_001155_030 0.0949113869 - - 60S ribosomal protein L10A [Hevea brasiliensis]
15 Hb_000751_130 0.0956283122 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
16 Hb_000329_310 0.0963531911 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
17 Hb_000444_050 0.0964750033 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
18 Hb_001143_080 0.0967724726 - - PREDICTED: F-box protein 7 [Jatropha curcas]
19 Hb_002759_060 0.0969627889 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
20 Hb_154648_010 0.0977730545 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001242_110 Hb_001242_110 Hb_148209_080 Hb_148209_080 Hb_001242_110--Hb_148209_080 Hb_000028_140 Hb_000028_140 Hb_001242_110--Hb_000028_140 Hb_003996_020 Hb_003996_020 Hb_001242_110--Hb_003996_020 Hb_000227_230 Hb_000227_230 Hb_001242_110--Hb_000227_230 Hb_015175_030 Hb_015175_030 Hb_001242_110--Hb_015175_030 Hb_027073_040 Hb_027073_040 Hb_001242_110--Hb_027073_040 Hb_000340_140 Hb_000340_140 Hb_148209_080--Hb_000340_140 Hb_000230_540 Hb_000230_540 Hb_148209_080--Hb_000230_540 Hb_004032_100 Hb_004032_100 Hb_148209_080--Hb_004032_100 Hb_000751_130 Hb_000751_130 Hb_148209_080--Hb_000751_130 Hb_148209_080--Hb_015175_030 Hb_000028_140--Hb_027073_040 Hb_000239_010 Hb_000239_010 Hb_000028_140--Hb_000239_010 Hb_001155_030 Hb_001155_030 Hb_000028_140--Hb_001155_030 Hb_000028_140--Hb_000227_230 Hb_000028_140--Hb_003996_020 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_006922_110 Hb_006922_110 Hb_003996_020--Hb_006922_110 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040 Hb_154648_010 Hb_154648_010 Hb_003996_020--Hb_154648_010 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_015175_030--Hb_004032_100 Hb_000283_110 Hb_000283_110 Hb_015175_030--Hb_000283_110 Hb_015175_030--Hb_001505_020 Hb_015175_030--Hb_001998_050 Hb_015175_030--Hb_000227_230 Hb_000274_020 Hb_000274_020 Hb_015175_030--Hb_000274_020 Hb_027073_040--Hb_002759_060 Hb_000270_370 Hb_000270_370 Hb_027073_040--Hb_000270_370 Hb_027073_040--Hb_033834_040 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.048 29.1642 13.3518 32.7789 39.9831 100.488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.0778 125.827 87.1378 50.154 22.1608

CAGE analysis