Hb_001242_130

Information

Type -
Description -
Location Contig1242: 136196-148786
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11830g
description POPTRDRAFT_551772; transducin-related family protein
nr
ID XP_012073934.1
description PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
swissprot
ID Q93Z38
description Tryptophan aminotransferase-related protein 4 OS=Arabidopsis thaliana GN=TAR4 PE=2 SV=2
trembl
ID B9GNN7
description Transducin-related family protein OS=Populus trichocarpa GN=POPTR_0002s11830g PE=4 SV=1
Gene Ontology
ID GO:0005515
description transducin-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07351: 142781-148671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_130 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
2 Hb_012725_060 0.0599542536 - - protein binding protein, putative [Ricinus communis]
3 Hb_027472_070 0.0717591089 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
4 Hb_004712_130 0.0782462264 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
5 Hb_000479_140 0.085727598 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
6 Hb_000497_300 0.0886454336 - - peroxisomal membrane protein [Hevea brasiliensis]
7 Hb_001352_020 0.0895105465 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
8 Hb_002686_090 0.0898110453 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
9 Hb_001716_040 0.0912885849 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
10 Hb_000204_120 0.0929363107 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
11 Hb_001865_070 0.092993631 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
12 Hb_004480_100 0.0938133629 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
13 Hb_003943_110 0.096018659 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
14 Hb_000417_200 0.0970657614 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
15 Hb_002235_040 0.0970972763 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
16 Hb_010344_050 0.0971284998 - - Adagio 1 -like protein [Gossypium arboreum]
17 Hb_000482_040 0.0971856775 - - Protein YME1, putative [Ricinus communis]
18 Hb_001999_090 0.0976141728 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
19 Hb_000635_060 0.0976325342 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_000327_180 0.100813609 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001242_130 Hb_001242_130 Hb_012725_060 Hb_012725_060 Hb_001242_130--Hb_012725_060 Hb_027472_070 Hb_027472_070 Hb_001242_130--Hb_027472_070 Hb_004712_130 Hb_004712_130 Hb_001242_130--Hb_004712_130 Hb_000479_140 Hb_000479_140 Hb_001242_130--Hb_000479_140 Hb_000497_300 Hb_000497_300 Hb_001242_130--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001242_130--Hb_001352_020 Hb_012725_060--Hb_027472_070 Hb_000417_200 Hb_000417_200 Hb_012725_060--Hb_000417_200 Hb_001865_070 Hb_001865_070 Hb_012725_060--Hb_001865_070 Hb_001405_070 Hb_001405_070 Hb_012725_060--Hb_001405_070 Hb_002235_040 Hb_002235_040 Hb_012725_060--Hb_002235_040 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_027472_070--Hb_004712_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_004712_130--Hb_000497_300 Hb_004712_130--Hb_001999_090 Hb_010344_050 Hb_010344_050 Hb_004712_130--Hb_010344_050 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_000366_040 Hb_000366_040 Hb_004712_130--Hb_000366_040 Hb_000471_110 Hb_000471_110 Hb_000479_140--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000479_140--Hb_000406_130 Hb_000020_120 Hb_000020_120 Hb_000479_140--Hb_000020_120 Hb_000479_140--Hb_010344_050 Hb_000479_140--Hb_000497_300 Hb_000497_300--Hb_010344_050 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_001352_020--Hb_000116_260 Hb_001352_020--Hb_000406_130 Hb_001352_020--Hb_001789_150 Hb_001352_020--Hb_000471_110 Hb_001352_020--Hb_010344_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80759 6.86853 4.22878 5.93082 3.78063 5.25292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33496 7.72584 11.3327 10.3007 12.4914

CAGE analysis