Hb_001242_140

Information

Type -
Description -
Location Contig1242: 164524-170767
Sequence    

Annotation

kegg
ID rcu:RCOM_0962130
description mitochondrial carrier protein, putative
nr
ID XP_002524353.1
description mitochondrial carrier protein, putative [Ricinus communis]
swissprot
ID Q94AG6
description S-adenosylmethionine carrier 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SAMC1 PE=1 SV=1
trembl
ID B9SED4
description Mitochondrial carrier protein, putative OS=Ricinus communis GN=RCOM_0962130 PE=3 SV=1
Gene Ontology
ID GO:0016021
description s-adenosylmethionine carrier chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07352: 164547-168209 , PASA_asmbl_07355: 169072-170708 , PASA_asmbl_07356: 170190-170365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_140 0.0 - - mitochondrial carrier protein, putative [Ricinus communis]
2 Hb_005307_050 0.0915666611 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
3 Hb_002613_020 0.1004072607 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
4 Hb_001019_150 0.1120360564 - - Acyl-protein thioesterase, putative [Ricinus communis]
5 Hb_003106_100 0.1126967756 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_016734_070 0.1146477212 - - hypothetical_protein [Oryza brachyantha]
7 Hb_186982_040 0.1160165334 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
8 Hb_003880_040 0.1202737956 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
9 Hb_000808_190 0.1211920381 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
10 Hb_000016_080 0.125605847 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
11 Hb_000085_350 0.1294157113 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
12 Hb_000834_030 0.1303482303 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
13 Hb_000056_070 0.1312647883 - - -
14 Hb_002876_020 0.1328930011 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
15 Hb_000030_200 0.1331828652 - - PREDICTED: early nodulin-93-like [Populus euphratica]
16 Hb_099136_010 0.1347273881 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
17 Hb_087749_010 0.1351175653 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
18 Hb_000431_070 0.1366473627 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
19 Hb_007065_010 0.1373623707 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
20 Hb_002000_140 0.1377286335 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001242_140 Hb_001242_140 Hb_005307_050 Hb_005307_050 Hb_001242_140--Hb_005307_050 Hb_002613_020 Hb_002613_020 Hb_001242_140--Hb_002613_020 Hb_001019_150 Hb_001019_150 Hb_001242_140--Hb_001019_150 Hb_003106_100 Hb_003106_100 Hb_001242_140--Hb_003106_100 Hb_016734_070 Hb_016734_070 Hb_001242_140--Hb_016734_070 Hb_186982_040 Hb_186982_040 Hb_001242_140--Hb_186982_040 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_007928_030 Hb_007928_030 Hb_005307_050--Hb_007928_030 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_000431_070 Hb_000431_070 Hb_002613_020--Hb_000431_070 Hb_007065_010 Hb_007065_010 Hb_002613_020--Hb_007065_010 Hb_087749_010 Hb_087749_010 Hb_002613_020--Hb_087749_010 Hb_000016_080 Hb_000016_080 Hb_002613_020--Hb_000016_080 Hb_007576_170 Hb_007576_170 Hb_002613_020--Hb_007576_170 Hb_033153_060 Hb_033153_060 Hb_002613_020--Hb_033153_060 Hb_001019_150--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_001019_150--Hb_002876_020 Hb_000056_070 Hb_000056_070 Hb_001019_150--Hb_000056_070 Hb_007827_010 Hb_007827_010 Hb_001019_150--Hb_007827_010 Hb_001329_150 Hb_001329_150 Hb_001019_150--Hb_001329_150 Hb_001353_010 Hb_001353_010 Hb_001019_150--Hb_001353_010 Hb_003106_100--Hb_002876_020 Hb_000649_140 Hb_000649_140 Hb_003106_100--Hb_000649_140 Hb_000428_060 Hb_000428_060 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_005235_030 Hb_005235_030 Hb_016734_070--Hb_005235_030 Hb_002000_140 Hb_002000_140 Hb_016734_070--Hb_002000_140 Hb_016734_070--Hb_000808_190 Hb_000463_130 Hb_000463_130 Hb_016734_070--Hb_000463_130 Hb_000215_330 Hb_000215_330 Hb_016734_070--Hb_000215_330 Hb_000136_350 Hb_000136_350 Hb_186982_040--Hb_000136_350 Hb_003098_020 Hb_003098_020 Hb_186982_040--Hb_003098_020 Hb_000538_120 Hb_000538_120 Hb_186982_040--Hb_000538_120 Hb_186982_040--Hb_007928_030 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.66315 0.362279 2.17871 3.9553 1.06685 2.256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32455 6.97062 2.22208 4.11236 3.04304

CAGE analysis