Hb_001242_180

Information

Type -
Description -
Location Contig1242: 207532-211984
Sequence    

Annotation

kegg
ID rcu:RCOM_0962250
description choline/ethanolamine kinase, putative (EC:2.7.1.82)
nr
ID XP_002524355.1
description choline/ethanolamine kinase, putative [Ricinus communis]
swissprot
ID Q9M9H6
description Probable choline kinase 1 OS=Arabidopsis thaliana GN=CK1 PE=2 SV=1
trembl
ID B9SED6
description Choline/ethanolamine kinase, putative OS=Ricinus communis GN=RCOM_0962250 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable choline kinase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07357: 210946-211253 , PASA_asmbl_07358: 207857-212081 , PASA_asmbl_07359: 207856-212081 , PASA_asmbl_07360: 208398-208823 , PASA_asmbl_07361: 209799-211185
cDNA
(Sanger)
(ID:Location)		 036_K09.ab1: 207857-209967

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_180 0.0 - - choline/ethanolamine kinase, putative [Ricinus communis]
2 Hb_000003_240 0.1295283861 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001579_070 0.1375407499 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
4 Hb_005348_090 0.1407970255 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
5 Hb_001878_020 0.1478809387 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
6 Hb_000454_080 0.1523786743 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
7 Hb_002217_190 0.1546567828 - - invertase [Hevea brasiliensis]
8 Hb_031108_010 0.1564469729 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
9 Hb_001623_410 0.1579167018 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
10 Hb_002151_130 0.158208944 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
11 Hb_119316_020 0.1638085595 - - -
12 Hb_001636_060 0.1651071315 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
13 Hb_001627_010 0.1658373715 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_011930_120 0.1661867766 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
15 Hb_001519_060 0.1675351716 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
16 Hb_124677_020 0.1693261347 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
17 Hb_000984_290 0.1702661494 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
18 Hb_155946_030 0.1732948432 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
19 Hb_001511_250 0.1735822862 - - fatty acid desaturase [Manihot esculenta]
20 Hb_007904_290 0.1739181496 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001242_180 Hb_001242_180 Hb_000003_240 Hb_000003_240 Hb_001242_180--Hb_000003_240 Hb_001579_070 Hb_001579_070 Hb_001242_180--Hb_001579_070 Hb_005348_090 Hb_005348_090 Hb_001242_180--Hb_005348_090 Hb_001878_020 Hb_001878_020 Hb_001242_180--Hb_001878_020 Hb_000454_080 Hb_000454_080 Hb_001242_180--Hb_000454_080 Hb_002217_190 Hb_002217_190 Hb_001242_180--Hb_002217_190 Hb_000003_240--Hb_001579_070 Hb_000680_180 Hb_000680_180 Hb_000003_240--Hb_000680_180 Hb_002876_070 Hb_002876_070 Hb_000003_240--Hb_002876_070 Hb_001519_060 Hb_001519_060 Hb_000003_240--Hb_001519_060 Hb_011930_120 Hb_011930_120 Hb_000003_240--Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001579_070--Hb_001519_060 Hb_001579_070--Hb_000680_180 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_002151_130 Hb_002151_130 Hb_005348_090--Hb_002151_130 Hb_005348_090--Hb_000003_240 Hb_000260_300 Hb_000260_300 Hb_005348_090--Hb_000260_300 Hb_124677_020 Hb_124677_020 Hb_005348_090--Hb_124677_020 Hb_004235_060 Hb_004235_060 Hb_005348_090--Hb_004235_060 Hb_001878_020--Hb_000454_080 Hb_001878_020--Hb_005348_090 Hb_002400_020 Hb_002400_020 Hb_001878_020--Hb_002400_020 Hb_002311_160 Hb_002311_160 Hb_001878_020--Hb_002311_160 Hb_001878_020--Hb_124677_020 Hb_000071_090 Hb_000071_090 Hb_000454_080--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_000454_080--Hb_000836_420 Hb_000495_050 Hb_000495_050 Hb_000454_080--Hb_000495_050 Hb_000985_140 Hb_000985_140 Hb_000454_080--Hb_000985_140 Hb_008406_070 Hb_008406_070 Hb_000454_080--Hb_008406_070 Hb_001769_120 Hb_001769_120 Hb_000454_080--Hb_001769_120 Hb_002217_190--Hb_001519_060 Hb_008173_060 Hb_008173_060 Hb_002217_190--Hb_008173_060 Hb_000818_120 Hb_000818_120 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_176472_020 Hb_176472_020 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.852341 134.376 158.74 63.1811 0.756128 3.2774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.49 13.297 9.37254 16.73 25.239

CAGE analysis