Hb_001243_040

Information

Type -
Description -
Location Contig1243: 23540-52383
Sequence    

Annotation

kegg
ID sly:101257218
description uncharacterized LOC101257218
nr
ID XP_009610661.1
description PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
swissprot
ID Q9URY4
description Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1
trembl
ID F6I124
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02000 PE=4 SV=1
Gene Ontology
ID GO:0004040
description amidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07387: 32622-35204 , PASA_asmbl_07388: 46489-52397 , PASA_asmbl_07389: 50676-52397 , PASA_asmbl_07390: 46913-47212
cDNA
(Sanger)
(ID:Location)		 023_F20.ab1: 51497-52397 , 024_L24.ab1: 51471-52397

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001243_040 0.0 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
2 Hb_114310_090 0.0728554138 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
3 Hb_018133_040 0.0820181495 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
4 Hb_000731_270 0.0845825507 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
5 Hb_001632_040 0.0850345415 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
6 Hb_001696_010 0.0867640958 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
7 Hb_001322_170 0.088813501 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
8 Hb_007416_330 0.089931152 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
9 Hb_002276_170 0.0916690888 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
10 Hb_002025_020 0.0935805538 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
11 Hb_000347_070 0.0947258794 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008221_180 0.0952711077 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
13 Hb_001019_190 0.0954825864 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000003_290 0.09602299 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
15 Hb_000819_080 0.0968635786 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000025_640 0.0979717996 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
17 Hb_000463_140 0.0983535791 - - Poly(rC)-binding protein, putative [Ricinus communis]
18 Hb_001379_110 0.0995294047 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
19 Hb_028089_010 0.0997658513 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
20 Hb_000342_130 0.0997913953 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001243_040 Hb_001243_040 Hb_114310_090 Hb_114310_090 Hb_001243_040--Hb_114310_090 Hb_018133_040 Hb_018133_040 Hb_001243_040--Hb_018133_040 Hb_000731_270 Hb_000731_270 Hb_001243_040--Hb_000731_270 Hb_001632_040 Hb_001632_040 Hb_001243_040--Hb_001632_040 Hb_001696_010 Hb_001696_010 Hb_001243_040--Hb_001696_010 Hb_001322_170 Hb_001322_170 Hb_001243_040--Hb_001322_170 Hb_007416_330 Hb_007416_330 Hb_114310_090--Hb_007416_330 Hb_032202_140 Hb_032202_140 Hb_114310_090--Hb_032202_140 Hb_002013_020 Hb_002013_020 Hb_114310_090--Hb_002013_020 Hb_114310_090--Hb_001632_040 Hb_123915_040 Hb_123915_040 Hb_114310_090--Hb_123915_040 Hb_002276_170 Hb_002276_170 Hb_018133_040--Hb_002276_170 Hb_018133_040--Hb_114310_090 Hb_018133_040--Hb_001322_170 Hb_018133_040--Hb_001632_040 Hb_008096_010 Hb_008096_010 Hb_018133_040--Hb_008096_010 Hb_000347_070 Hb_000347_070 Hb_000731_270--Hb_000347_070 Hb_007645_100 Hb_007645_100 Hb_000731_270--Hb_007645_100 Hb_000207_180 Hb_000207_180 Hb_000731_270--Hb_000207_180 Hb_006420_040 Hb_006420_040 Hb_000731_270--Hb_006420_040 Hb_004254_090 Hb_004254_090 Hb_000731_270--Hb_004254_090 Hb_000441_120 Hb_000441_120 Hb_000731_270--Hb_000441_120 Hb_004414_060 Hb_004414_060 Hb_001632_040--Hb_004414_060 Hb_001632_040--Hb_002276_170 Hb_004907_080 Hb_004907_080 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_029510_050 Hb_029510_050 Hb_001696_010--Hb_029510_050 Hb_004225_050 Hb_004225_050 Hb_001696_010--Hb_004225_050 Hb_002740_180 Hb_002740_180 Hb_001696_010--Hb_002740_180 Hb_002809_050 Hb_002809_050 Hb_001696_010--Hb_002809_050 Hb_028089_010 Hb_028089_010 Hb_001696_010--Hb_028089_010 Hb_002685_210 Hb_002685_210 Hb_001696_010--Hb_002685_210 Hb_000313_260 Hb_000313_260 Hb_001322_170--Hb_000313_260 Hb_001322_170--Hb_001696_010 Hb_001322_170--Hb_001632_040 Hb_007304_110 Hb_007304_110 Hb_001322_170--Hb_007304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54349 1.35725 1.7853 1.06086 2.89013 1.67966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51866 1.64852 2.59162 1.40269 1.94787

CAGE analysis