Hb_001244_070

Information

Type -
Description -
Location Contig1244: 101741-107083
Sequence    

Annotation

kegg
ID pop:POPTR_0004s13470g
description POPTRDRAFT_1076165; hypothetical protein
nr
ID XP_002305327.1
description hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
swissprot
ID Q5EA79
description Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1
trembl
ID B9H3Y1
description Aldose 1-epimerase OS=Populus trichocarpa GN=POPTR_0004s13470g PE=3 SV=1
Gene Ontology
ID GO:0004034
description aldose 1-epimerase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07409: 101762-106959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001244_070 0.0 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
2 Hb_000152_120 0.0805856561 - - alpha-l-fucosidase, putative [Ricinus communis]
3 Hb_000880_040 0.0826922367 - - -
4 Hb_000365_440 0.0834484029 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_001405_040 0.0922565901 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
6 Hb_004116_050 0.093271371 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
7 Hb_020805_070 0.0971383343 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
8 Hb_170023_010 0.0980290388 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
9 Hb_000337_030 0.099866232 - - amino acid transporter, putative [Ricinus communis]
10 Hb_002851_070 0.1060884029 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
11 Hb_000260_750 0.1077931606 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
12 Hb_009693_010 0.1124541713 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
13 Hb_019278_010 0.1154886732 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
14 Hb_000416_090 0.1163666433 - - Aquaporin NIP1.1, putative [Ricinus communis]
15 Hb_005050_030 0.1204765858 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
16 Hb_004324_320 0.1214586999 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
17 Hb_004855_080 0.1224402308 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
18 Hb_019570_010 0.1234006756 - - lyase, putative [Ricinus communis]
19 Hb_000008_150 0.1241029915 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
20 Hb_039435_010 0.1241897339 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]

Gene co-expression network

sample Hb_001244_070 Hb_001244_070 Hb_000152_120 Hb_000152_120 Hb_001244_070--Hb_000152_120 Hb_000880_040 Hb_000880_040 Hb_001244_070--Hb_000880_040 Hb_000365_440 Hb_000365_440 Hb_001244_070--Hb_000365_440 Hb_001405_040 Hb_001405_040 Hb_001244_070--Hb_001405_040 Hb_004116_050 Hb_004116_050 Hb_001244_070--Hb_004116_050 Hb_020805_070 Hb_020805_070 Hb_001244_070--Hb_020805_070 Hb_001104_020 Hb_001104_020 Hb_000152_120--Hb_001104_020 Hb_000732_220 Hb_000732_220 Hb_000152_120--Hb_000732_220 Hb_000951_090 Hb_000951_090 Hb_000152_120--Hb_000951_090 Hb_000152_120--Hb_020805_070 Hb_000337_030 Hb_000337_030 Hb_000152_120--Hb_000337_030 Hb_009693_010 Hb_009693_010 Hb_000880_040--Hb_009693_010 Hb_000260_750 Hb_000260_750 Hb_000880_040--Hb_000260_750 Hb_000880_040--Hb_000365_440 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_002851_070 Hb_002851_070 Hb_000880_040--Hb_002851_070 Hb_004709_030 Hb_004709_030 Hb_000365_440--Hb_004709_030 Hb_000365_440--Hb_170023_010 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_019278_010 Hb_019278_010 Hb_000365_440--Hb_019278_010 Hb_001405_040--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_001405_040--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001405_040--Hb_000008_150 Hb_001405_040--Hb_004116_050 Hb_003506_010 Hb_003506_010 Hb_001405_040--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_001405_040--Hb_005892_040 Hb_067558_010 Hb_067558_010 Hb_004116_050--Hb_067558_010 Hb_000416_090 Hb_000416_090 Hb_004116_050--Hb_000416_090 Hb_004116_050--Hb_004855_080 Hb_005181_190 Hb_005181_190 Hb_004116_050--Hb_005181_190 Hb_004162_320 Hb_004162_320 Hb_020805_070--Hb_004162_320 Hb_020805_070--Hb_003506_010 Hb_020805_070--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_020805_070--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_020805_070--Hb_000901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.23035 15.6129 10.2212 0 0.0126592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.043062 9.84058 14.34

CAGE analysis