Hb_001244_150

Information

Type -
Description -
Location Contig1244: 210194-213028
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04640g
description POPTRDRAFT_833248; transformer serine/arginine-rich ribonucleoprotein
nr
ID XP_002314126.1
description transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
swissprot
ID Q84TH4
description Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1
trembl
ID B9HP82
description Transformer serine/arginine-rich ribonucleoprotein OS=Populus trichocarpa GN=POPTR_0009s04640g PE=4 SV=1
Gene Ontology
ID GO:0019013
description serine arginine-rich splicing factor sr45a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07411: 210240-213072 , PASA_asmbl_07412: 210240-213086 , PASA_asmbl_07413: 210240-213072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001244_150 0.0 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
2 Hb_000573_060 0.0649166193 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
3 Hb_002641_130 0.0696612268 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
4 Hb_002233_130 0.0711161375 - - transporter, putative [Ricinus communis]
5 Hb_004324_330 0.0771134507 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
6 Hb_002350_010 0.0782359676 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
7 Hb_000608_300 0.0785068418 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
8 Hb_001789_040 0.079929594 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
9 Hb_000086_150 0.0804599256 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
10 Hb_004306_030 0.0808394423 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
11 Hb_000260_560 0.0812763 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
12 Hb_000579_010 0.0822779477 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
13 Hb_027472_220 0.0857516647 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
14 Hb_007305_020 0.0861124296 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
15 Hb_012055_110 0.0864417228 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
16 Hb_017469_110 0.0869868402 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
17 Hb_005211_020 0.0870519953 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
18 Hb_000563_420 0.0878484674 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
19 Hb_026053_040 0.0881169288 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000205_260 0.0888760363 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]

Gene co-expression network

sample Hb_001244_150 Hb_001244_150 Hb_000573_060 Hb_000573_060 Hb_001244_150--Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_002233_130 Hb_002233_130 Hb_001244_150--Hb_002233_130 Hb_004324_330 Hb_004324_330 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300 Hb_000573_060--Hb_002641_130 Hb_000086_150 Hb_000086_150 Hb_000573_060--Hb_000086_150 Hb_000260_560 Hb_000260_560 Hb_000573_060--Hb_000260_560 Hb_009486_080 Hb_009486_080 Hb_000573_060--Hb_009486_080 Hb_001001_150 Hb_001001_150 Hb_000573_060--Hb_001001_150 Hb_000563_130 Hb_000563_130 Hb_002641_130--Hb_000563_130 Hb_002641_130--Hb_009486_080 Hb_002641_130--Hb_001001_150 Hb_002641_130--Hb_000086_150 Hb_002233_130--Hb_000260_560 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_007283_010 Hb_007283_010 Hb_004324_330--Hb_007283_010 Hb_000175_410 Hb_000175_410 Hb_004324_330--Hb_000175_410 Hb_004324_330--Hb_007305_020 Hb_000205_260 Hb_000205_260 Hb_004324_330--Hb_000205_260 Hb_001191_120 Hb_001191_120 Hb_002350_010--Hb_001191_120 Hb_027472_220 Hb_027472_220 Hb_002350_010--Hb_027472_220 Hb_000671_070 Hb_000671_070 Hb_002350_010--Hb_000671_070 Hb_000025_710 Hb_000025_710 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_002350_010--Hb_000563_130 Hb_004306_030 Hb_004306_030 Hb_000608_300--Hb_004306_030 Hb_001789_040 Hb_001789_040 Hb_000608_300--Hb_001789_040 Hb_000568_050 Hb_000568_050 Hb_000608_300--Hb_000568_050 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_000608_300--Hb_005211_020 Hb_012055_110 Hb_012055_110 Hb_000608_300--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0219 75.5205 64.8016 44.9343 82.8902 48.2656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6557 34.1798 28.9613 56.8114 101.079

CAGE analysis