Hb_001245_100

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig1245: 180750-185018
Sequence    

Annotation

kegg
ID rcu:RCOM_1298470
description ATP synthase alpha subunit mitochondrial, putative (EC:3.6.3.14)
nr
ID XP_002519372.1
description ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
swissprot
ID Q40359
description PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1
trembl
ID B9S053
description ATP synthase alpha subunit mitochondrial, putative OS=Ricinus communis GN=RCOM_1298470 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07419: 169441-185004 , PASA_asmbl_07421: 182744-183103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001245_100 0.0 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
2 Hb_001766_060 0.0459360646 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000667_070 0.0556730322 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_005846_040 0.0569719531 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
5 Hb_027380_050 0.0610512074 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
6 Hb_003151_040 0.0619636458 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
7 Hb_002046_180 0.0635913198 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
8 Hb_003052_190 0.0655195838 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
9 Hb_000373_070 0.0660850019 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_058999_020 0.0689437023 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
11 Hb_012019_010 0.0697525433 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
12 Hb_001163_050 0.0713815382 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
13 Hb_001030_020 0.0718672785 - - Poly(A) polymerase alpha, putative [Ricinus communis]
14 Hb_000331_550 0.0725955444 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
15 Hb_004116_190 0.0744558174 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
16 Hb_005779_060 0.0759551042 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
17 Hb_000676_180 0.0766110879 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
18 Hb_000703_350 0.078251777 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
19 Hb_004109_170 0.0785273616 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_000866_220 0.0798968264 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]

Gene co-expression network

sample Hb_001245_100 Hb_001245_100 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_005846_040 Hb_005846_040 Hb_001245_100--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001245_100--Hb_027380_050 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_001766_060--Hb_003151_040 Hb_001766_060--Hb_005846_040 Hb_001246_110 Hb_001246_110 Hb_001766_060--Hb_001246_110 Hb_001766_060--Hb_027380_050 Hb_012019_010 Hb_012019_010 Hb_001766_060--Hb_012019_010 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000656_240 Hb_000656_240 Hb_000667_070--Hb_000656_240 Hb_015279_010 Hb_015279_010 Hb_000667_070--Hb_015279_010 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_005779_060 Hb_005779_060 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_000152_500 Hb_000152_500 Hb_027380_050--Hb_000152_500 Hb_001030_020 Hb_001030_020 Hb_027380_050--Hb_001030_020 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_002046_180--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_002046_180--Hb_002110_150 Hb_002046_180--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.2153 56.8833 54.2615 49.13 39.7502 54.9674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.3567 111.16 81.0544 48.7795 39.8916

CAGE analysis