Hb_001246_030

Information

Type -
Description -
Location Contig1246: 25500-33469
Sequence    

Annotation

kegg
ID rcu:RCOM_0658760
description ring finger protein, putative
nr
ID KDP28901.1
description hypothetical protein JCGZ_14672 [Jatropha curcas]
swissprot
ID Q91XF4
description E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1
trembl
ID A0A067JY53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14672 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07428: 24718-25309 , PASA_asmbl_07429: 26681-32907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_030 0.0 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
2 Hb_014894_010 0.100147261 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
3 Hb_001157_110 0.1157929125 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
4 Hb_000497_110 0.1169642521 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
5 Hb_098315_080 0.1253370507 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
6 Hb_119494_010 0.1270029235 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
7 Hb_002005_100 0.1403855581 - - -
8 Hb_003253_050 0.1409655159 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
9 Hb_109002_020 0.1433472766 - - PREDICTED: CTP synthase-like [Jatropha curcas]
10 Hb_002391_210 0.1507874537 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
11 Hb_039145_010 0.1509259113 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_077562_030 0.1509899831 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
13 Hb_108329_020 0.1518074811 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
14 Hb_004449_080 0.1527224366 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
15 Hb_006642_040 0.1527922421 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
16 Hb_007763_030 0.1535277319 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]
17 Hb_002631_080 0.1535786687 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
18 Hb_008864_090 0.1543539671 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
19 Hb_008147_070 0.1544458071 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
20 Hb_002400_410 0.1545285885 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001246_030 Hb_001246_030 Hb_014894_010 Hb_014894_010 Hb_001246_030--Hb_014894_010 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_119494_010 Hb_119494_010 Hb_001246_030--Hb_119494_010 Hb_002005_100 Hb_002005_100 Hb_001246_030--Hb_002005_100 Hb_014894_010--Hb_119494_010 Hb_014894_010--Hb_002005_100 Hb_001258_060 Hb_001258_060 Hb_014894_010--Hb_001258_060 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_008864_090 Hb_008864_090 Hb_014894_010--Hb_008864_090 Hb_001157_110--Hb_000497_110 Hb_000096_160 Hb_000096_160 Hb_001157_110--Hb_000096_160 Hb_019654_030 Hb_019654_030 Hb_001157_110--Hb_019654_030 Hb_002631_080 Hb_002631_080 Hb_001157_110--Hb_002631_080 Hb_000228_110 Hb_000228_110 Hb_001157_110--Hb_000228_110 Hb_001085_240 Hb_001085_240 Hb_001157_110--Hb_001085_240 Hb_011671_180 Hb_011671_180 Hb_000497_110--Hb_011671_180 Hb_002000_080 Hb_002000_080 Hb_000497_110--Hb_002000_080 Hb_006642_040 Hb_006642_040 Hb_000497_110--Hb_006642_040 Hb_001009_170 Hb_001009_170 Hb_000497_110--Hb_001009_170 Hb_004837_130 Hb_004837_130 Hb_000497_110--Hb_004837_130 Hb_007023_030 Hb_007023_030 Hb_098315_080--Hb_007023_030 Hb_000053_060 Hb_000053_060 Hb_098315_080--Hb_000053_060 Hb_004411_060 Hb_004411_060 Hb_098315_080--Hb_004411_060 Hb_004449_080 Hb_004449_080 Hb_098315_080--Hb_004449_080 Hb_006909_010 Hb_006909_010 Hb_098315_080--Hb_006909_010 Hb_001452_210 Hb_001452_210 Hb_098315_080--Hb_001452_210 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_119494_010--Hb_002005_100 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_001214_090 Hb_001214_090 Hb_119494_010--Hb_001214_090 Hb_000190_090 Hb_000190_090 Hb_002005_100--Hb_000190_090 Hb_019053_030 Hb_019053_030 Hb_002005_100--Hb_019053_030 Hb_002005_100--Hb_004411_060 Hb_002005_100--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_002005_100--Hb_016522_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75492 3.35171 0.879675 3.7748 2.30731 5.69724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55083 3.57343 7.5605 15.1953 3.77434

CAGE analysis