Hb_001246_040

Information

Type -
Description -
Location Contig1246: 35570-36571
Sequence    

Annotation

kegg
ID rcu:RCOM_0658770
description ring finger protein, putative
nr
ID KDP28902.1
description hypothetical protein JCGZ_14673 [Jatropha curcas]
swissprot
ID Q9LY41
description E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4 PE=1 SV=1
trembl
ID A0A067JYE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14673 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07431: 35844-36057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_040 0.0 - - hypothetical protein JCGZ_14673 [Jatropha curcas]
2 Hb_099538_010 0.1964021876 - - unnamed protein product [Vitis vinifera]
3 Hb_000056_030 0.2028457753 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
4 Hb_000936_030 0.2093132143 - - hypothetical protein RCOM_0615680 [Ricinus communis]
5 Hb_012055_080 0.2107982521 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
6 Hb_004410_020 0.2179804098 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
7 Hb_002811_210 0.2228813349 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
8 Hb_000742_180 0.2231157398 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
9 Hb_000925_150 0.2312974277 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
10 Hb_184109_010 0.2334090269 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
11 Hb_011033_010 0.2341249772 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_078448_010 0.2347084928 - - hypothetical protein L484_017526 [Morus notabilis]
13 Hb_000479_020 0.2348594973 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004129_060 0.2391931677 - - triacylglycerol lipase, putative [Ricinus communis]
15 Hb_000866_350 0.2398209026 - - -
16 Hb_030545_020 0.2399312104 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000373_020 0.2421320279 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
18 Hb_113974_010 0.2484698163 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000960_120 0.2489927869 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
20 Hb_130222_010 0.2500893696 - - hypothetical protein RCOM_1272620 [Ricinus communis]

Gene co-expression network

sample Hb_001246_040 Hb_001246_040 Hb_099538_010 Hb_099538_010 Hb_001246_040--Hb_099538_010 Hb_000056_030 Hb_000056_030 Hb_001246_040--Hb_000056_030 Hb_000936_030 Hb_000936_030 Hb_001246_040--Hb_000936_030 Hb_012055_080 Hb_012055_080 Hb_001246_040--Hb_012055_080 Hb_004410_020 Hb_004410_020 Hb_001246_040--Hb_004410_020 Hb_002811_210 Hb_002811_210 Hb_001246_040--Hb_002811_210 Hb_000679_290 Hb_000679_290 Hb_099538_010--Hb_000679_290 Hb_000373_020 Hb_000373_020 Hb_099538_010--Hb_000373_020 Hb_099538_010--Hb_004410_020 Hb_078448_010 Hb_078448_010 Hb_099538_010--Hb_078448_010 Hb_003085_070 Hb_003085_070 Hb_099538_010--Hb_003085_070 Hb_004880_040 Hb_004880_040 Hb_099538_010--Hb_004880_040 Hb_000032_360 Hb_000032_360 Hb_000056_030--Hb_000032_360 Hb_011033_010 Hb_011033_010 Hb_000056_030--Hb_011033_010 Hb_003581_230 Hb_003581_230 Hb_000056_030--Hb_003581_230 Hb_000925_150 Hb_000925_150 Hb_000056_030--Hb_000925_150 Hb_000056_030--Hb_012055_080 Hb_005890_020 Hb_005890_020 Hb_000056_030--Hb_005890_020 Hb_001755_040 Hb_001755_040 Hb_000936_030--Hb_001755_040 Hb_004129_060 Hb_004129_060 Hb_000936_030--Hb_004129_060 Hb_010705_040 Hb_010705_040 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090 Hb_003935_090 Hb_003935_090 Hb_012055_080--Hb_003935_090 Hb_007952_050 Hb_007952_050 Hb_012055_080--Hb_007952_050 Hb_012055_080--Hb_011033_010 Hb_007574_020 Hb_007574_020 Hb_012055_080--Hb_007574_020 Hb_004218_050 Hb_004218_050 Hb_012055_080--Hb_004218_050 Hb_012055_080--Hb_000925_150 Hb_004410_020--Hb_000373_020 Hb_003006_070 Hb_003006_070 Hb_004410_020--Hb_003006_070 Hb_004410_020--Hb_003085_070 Hb_001623_250 Hb_001623_250 Hb_004410_020--Hb_001623_250 Hb_002836_110 Hb_002836_110 Hb_004410_020--Hb_002836_110 Hb_000375_220 Hb_000375_220 Hb_004410_020--Hb_000375_220 Hb_004635_020 Hb_004635_020 Hb_002811_210--Hb_004635_020 Hb_000028_530 Hb_000028_530 Hb_002811_210--Hb_000028_530 Hb_000960_120 Hb_000960_120 Hb_002811_210--Hb_000960_120 Hb_000265_100 Hb_000265_100 Hb_002811_210--Hb_000265_100 Hb_010021_060 Hb_010021_060 Hb_002811_210--Hb_010021_060 Hb_002811_210--Hb_000936_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275974 0.0626743 1.99374 1.04846 0.460956 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0319752 0.244038

CAGE analysis