Hb_001246_090

Information

Type -
Description -
Location Contig1246: 51043-52268
Sequence    

Annotation

kegg
ID cic:CICLE_v10022877mg
description hypothetical protein
nr
ID XP_012083759.1
description PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
swissprot
ID P53665
description Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1
trembl
ID A0A067K1I7
description Acyl carrier protein OS=Jatropha curcas GN=JCGZ_14679 PE=3 SV=1
Gene Ontology
ID GO:0005759
description acyl carrier protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07435: 51190-52195
cDNA
(Sanger)
(ID:Location)		 015_A16r.ab1: 52608-62854

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_090 0.0 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
2 Hb_001135_050 0.0616504638 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
3 Hb_000494_020 0.0695975088 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
4 Hb_022250_040 0.0712487893 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
5 Hb_003392_040 0.0734992719 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
6 Hb_002105_090 0.0757784429 - - Rab4 [Hevea brasiliensis]
7 Hb_004324_310 0.0776947465 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001257_080 0.0785373799 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001221_410 0.0802921874 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
10 Hb_009711_030 0.0834079937 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
11 Hb_001184_090 0.0864044952 - - PREDICTED: TIP41-like protein [Jatropha curcas]
12 Hb_125000_010 0.0877302905 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_011689_080 0.0878020429 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
14 Hb_003540_040 0.0878050709 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
15 Hb_001377_290 0.0887951713 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_022216_020 0.0896768849 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_000500_130 0.0898905229 - - small GTPase [Hevea brasiliensis]
18 Hb_000169_010 0.0906490195 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
19 Hb_000720_120 0.0926001008 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
20 Hb_070986_010 0.092639069 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]

Gene co-expression network

sample Hb_001246_090 Hb_001246_090 Hb_001135_050 Hb_001135_050 Hb_001246_090--Hb_001135_050 Hb_000494_020 Hb_000494_020 Hb_001246_090--Hb_000494_020 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_003392_040 Hb_003392_040 Hb_001246_090--Hb_003392_040 Hb_002105_090 Hb_002105_090 Hb_001246_090--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_001246_090--Hb_004324_310 Hb_001135_050--Hb_003392_040 Hb_000169_010 Hb_000169_010 Hb_001135_050--Hb_000169_010 Hb_007254_040 Hb_007254_040 Hb_001135_050--Hb_007254_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_004048_070 Hb_004048_070 Hb_001135_050--Hb_004048_070 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_003392_040--Hb_000169_010 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_000032_570 Hb_000032_570 Hb_003392_040--Hb_000032_570 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_002105_090--Hb_010407_040 Hb_004324_310--Hb_011689_080 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_004324_310--Hb_001377_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5994 6.28686 10.7058 9.99724 26.0141 23.3884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.6984 28.5993 20.6766 11.8754 2.71245

CAGE analysis