Hb_001246_100

Information

Type -
Description -
Location Contig1246: 52274-62857
Sequence    

Annotation

kegg
ID tcc:TCM_005800
description Ras-related small GTP-binding family protein
nr
ID XP_007052416.1
description Ras-related small GTP-binding family protein [Theobroma cacao]
swissprot
ID O80501
description Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1
trembl
ID A0A061E2S0
description Ras-related small GTP-binding family protein OS=Theobroma cacao GN=TCM_005800 PE=3 SV=1
Gene Ontology
ID GO:0000139
description ras-related protein rabh1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07436: 52293-62856 , PASA_asmbl_07437: 61143-61668
cDNA
(Sanger)
(ID:Location)		 015_A16.ab1: 52357-62593 , 020_D20.ab1: 52293-62556 , 031_M08.ab1: 52293-62567 , 032_B07.ab1: 52357-62622 , 038_B04.ab1: 52357-62623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_100 0.0 - - Ras-related small GTP-binding family protein [Theobroma cacao]
2 Hb_006447_010 0.0623304463 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
3 Hb_001454_140 0.0656195937 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_007193_100 0.0744846672 - - syntaxin family protein [Populus trichocarpa]
5 Hb_000386_040 0.0789611075 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_000175_070 0.0791505709 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
7 Hb_143813_010 0.0827416605 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
8 Hb_002686_270 0.083485794 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001030_120 0.0841666619 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_010608_010 0.0841954224 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
11 Hb_000442_160 0.0845090285 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_001124_210 0.0847160085 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000317_430 0.085613527 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
14 Hb_000418_100 0.0861391904 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
15 Hb_133271_020 0.0864375387 - - prohibitin, putative [Ricinus communis]
16 Hb_003038_030 0.0871409924 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
17 Hb_003777_270 0.0885394927 - - 60S ribosomal protein L3B [Hevea brasiliensis]
18 Hb_003120_060 0.0895898778 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
19 Hb_003106_130 0.09049306 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
20 Hb_000103_140 0.0910592993 - - ribosomal protein S3a [Populus trichocarpa]

Gene co-expression network

sample Hb_001246_100 Hb_001246_100 Hb_006447_010 Hb_006447_010 Hb_001246_100--Hb_006447_010 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010 Hb_001243_050 Hb_001243_050 Hb_006447_010--Hb_001243_050 Hb_000442_160 Hb_000442_160 Hb_006447_010--Hb_000442_160 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_000049_040 Hb_000049_040 Hb_000386_040--Hb_000049_040 Hb_003038_030 Hb_003038_030 Hb_000386_040--Hb_003038_030 Hb_000943_070 Hb_000943_070 Hb_000386_040--Hb_000943_070 Hb_000188_100 Hb_000188_100 Hb_000386_040--Hb_000188_100 Hb_000172_370 Hb_000172_370 Hb_000386_040--Hb_000172_370 Hb_000175_070--Hb_000317_430 Hb_000175_070--Hb_029510_140 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_007747_090 Hb_007747_090 Hb_143813_010--Hb_007747_090 Hb_000510_090 Hb_000510_090 Hb_143813_010--Hb_000510_090 Hb_003120_060 Hb_003120_060 Hb_143813_010--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_143813_010--Hb_000019_230 Hb_001221_230 Hb_001221_230 Hb_143813_010--Hb_001221_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.5502 36.9453 24.4542 35.081 103.286 175.54
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.843 108.183 98.3108 40.4907 12.2731

CAGE analysis