Hb_001246_160

Information

Type -
Description -
Location Contig1246: 134270-138910
Sequence    

Annotation

kegg
ID rcu:RCOM_0658880
description dynamin, putative
nr
ID XP_012083766.1
description PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
swissprot
ID Q9FNX5
description Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1
trembl
ID A0A067K1J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14684 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 1e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07446: 134301-138886
cDNA
(Sanger)
(ID:Location)		 006_A24.ab1: 134395-136298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_160 0.0 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
2 Hb_000749_070 0.0968824339 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
3 Hb_000009_200 0.0990434227 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
4 Hb_005394_010 0.1034022011 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
5 Hb_002122_030 0.1082431595 - - -
6 Hb_018790_050 0.1119209684 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
7 Hb_056196_060 0.1121446569 - - hexokinase [Manihot esculenta]
8 Hb_041895_040 0.114869441 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013358_020 0.1175142438 - - ccr4-associated factor, putative [Ricinus communis]
10 Hb_000272_110 0.1175482232 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
11 Hb_001085_300 0.1191885601 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
12 Hb_005714_100 0.1229893023 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
13 Hb_000421_230 0.1259001516 - - retinal degeneration B beta, putative [Ricinus communis]
14 Hb_007253_010 0.1275920417 - - syntaxin, putative [Ricinus communis]
15 Hb_000805_040 0.1330258741 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_159809_050 0.1340753477 - - AT14A, putative [Ricinus communis]
17 Hb_000035_050 0.1352201123 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
18 Hb_000163_230 0.1352734441 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
19 Hb_002876_070 0.1357872255 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
20 Hb_015026_040 0.1363702718 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001246_160 Hb_001246_160 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_013358_020 Hb_013358_020 Hb_000749_070--Hb_013358_020 Hb_007253_010 Hb_007253_010 Hb_000749_070--Hb_007253_010 Hb_159809_050 Hb_159809_050 Hb_000749_070--Hb_159809_050 Hb_004117_170 Hb_004117_170 Hb_000749_070--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_000749_070--Hb_000035_050 Hb_005714_100 Hb_005714_100 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000009_200--Hb_000035_050 Hb_000009_200--Hb_056196_060 Hb_041895_040 Hb_041895_040 Hb_005394_010--Hb_041895_040 Hb_011671_110 Hb_011671_110 Hb_005394_010--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_005394_010--Hb_047442_010 Hb_015026_040 Hb_015026_040 Hb_005394_010--Hb_015026_040 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230 Hb_002122_030--Hb_000009_200 Hb_000805_040 Hb_000805_040 Hb_002122_030--Hb_000805_040 Hb_002122_030--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_002122_030--Hb_011689_100 Hb_004712_160 Hb_004712_160 Hb_002122_030--Hb_004712_160 Hb_018790_050--Hb_013358_020 Hb_018790_050--Hb_004117_170 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_018790_050--Hb_056196_060 Hb_018790_050--Hb_000035_050 Hb_018790_050--Hb_007253_010 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_056196_060--Hb_000035_050 Hb_056196_060--Hb_008112_010 Hb_056196_060--Hb_005714_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95636 49.728 42.7064 27.5796 4.76408 5.28096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37553 6.84042 4.64714 9.16049 5.85649

CAGE analysis