Hb_001247_010

Information

Type -
Description -
Location Contig1247: 4269-5919
Sequence    

Annotation

kegg
ID rcu:RCOM_1435920
description hypothetical protein
nr
ID AIE11286.1
description galactinol synthase [Manihot esculenta]
swissprot
ID C7G304
description Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1
trembl
ID A0A068J7T2
description Hexosyltransferase OS=Manihot esculenta GN=GolS5 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07465: 4274-6045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_010 0.0 - - galactinol synthase [Manihot esculenta]
2 Hb_000086_620 0.1313042698 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
3 Hb_000465_100 0.141450702 - - catalytic, putative [Ricinus communis]
4 Hb_097007_020 0.1485338949 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
5 Hb_000156_080 0.1530441519 - - Potassium channel KAT2, putative [Ricinus communis]
6 Hb_005656_200 0.1542172215 - - Cation transport protein chaC, putative [Ricinus communis]
7 Hb_003811_030 0.1548803184 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
8 Hb_006907_020 0.1617592462 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
9 Hb_000538_170 0.1618078156 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
10 Hb_009476_010 0.1688226571 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
11 Hb_001660_130 0.170381674 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
12 Hb_001623_410 0.1705394786 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
13 Hb_000247_150 0.1708807621 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
14 Hb_164146_020 0.1715483857 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_004899_360 0.1771746143 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_028285_020 0.1777559454 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
17 Hb_001369_020 0.1780893144 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
18 Hb_035677_010 0.1783944962 - - conserved hypothetical protein [Ricinus communis]
19 Hb_019026_040 0.18184354 - - S-locus lectin protein kinase family protein [Theobroma cacao]
20 Hb_008143_020 0.1822277969 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_010 Hb_001247_010 Hb_000086_620 Hb_000086_620 Hb_001247_010--Hb_000086_620 Hb_000465_100 Hb_000465_100 Hb_001247_010--Hb_000465_100 Hb_097007_020 Hb_097007_020 Hb_001247_010--Hb_097007_020 Hb_000156_080 Hb_000156_080 Hb_001247_010--Hb_000156_080 Hb_005656_200 Hb_005656_200 Hb_001247_010--Hb_005656_200 Hb_003811_030 Hb_003811_030 Hb_001247_010--Hb_003811_030 Hb_001623_410 Hb_001623_410 Hb_000086_620--Hb_001623_410 Hb_011930_120 Hb_011930_120 Hb_000086_620--Hb_011930_120 Hb_001989_060 Hb_001989_060 Hb_000086_620--Hb_001989_060 Hb_010126_030 Hb_010126_030 Hb_000086_620--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_000086_620--Hb_000451_040 Hb_077995_010 Hb_077995_010 Hb_000465_100--Hb_077995_010 Hb_006907_020 Hb_006907_020 Hb_000465_100--Hb_006907_020 Hb_004924_030 Hb_004924_030 Hb_000465_100--Hb_004924_030 Hb_001345_030 Hb_001345_030 Hb_000465_100--Hb_001345_030 Hb_000247_150 Hb_000247_150 Hb_000465_100--Hb_000247_150 Hb_035677_010 Hb_035677_010 Hb_097007_020--Hb_035677_010 Hb_004899_360 Hb_004899_360 Hb_097007_020--Hb_004899_360 Hb_097007_020--Hb_000247_150 Hb_012496_010 Hb_012496_010 Hb_097007_020--Hb_012496_010 Hb_097007_020--Hb_006907_020 Hb_000571_030 Hb_000571_030 Hb_097007_020--Hb_000571_030 Hb_004109_150 Hb_004109_150 Hb_000156_080--Hb_004109_150 Hb_011457_080 Hb_011457_080 Hb_000156_080--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_000156_080--Hb_004218_080 Hb_000402_180 Hb_000402_180 Hb_000156_080--Hb_000402_180 Hb_002030_100 Hb_002030_100 Hb_000156_080--Hb_002030_100 Hb_007193_030 Hb_007193_030 Hb_000156_080--Hb_007193_030 Hb_000422_050 Hb_000422_050 Hb_005656_200--Hb_000422_050 Hb_009476_010 Hb_009476_010 Hb_005656_200--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_005656_200--Hb_007441_150 Hb_000032_230 Hb_000032_230 Hb_005656_200--Hb_000032_230 Hb_001894_060 Hb_001894_060 Hb_005656_200--Hb_001894_060 Hb_032260_100 Hb_032260_100 Hb_005656_200--Hb_032260_100 Hb_006873_030 Hb_006873_030 Hb_003811_030--Hb_006873_030 Hb_019026_040 Hb_019026_040 Hb_003811_030--Hb_019026_040 Hb_107552_020 Hb_107552_020 Hb_003811_030--Hb_107552_020 Hb_003929_040 Hb_003929_040 Hb_003811_030--Hb_003929_040 Hb_036492_020 Hb_036492_020 Hb_003811_030--Hb_036492_020 Hb_010175_050 Hb_010175_050 Hb_003811_030--Hb_010175_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.565403 112.182 53.4616 12.8129 0.207693 0.198594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21823 1.7164 3.68829 3.82132 24.6888

CAGE analysis