Hb_001247_020

Information

Type -
Description -
Location Contig1247: 9327-10787
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00850g
description galactinol synthase family protein
nr
ID XP_006382305.1
description galactinol synthase family protein [Populus trichocarpa]
swissprot
ID Q9FXB2
description Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1
trembl
ID T1SPV2
description Hexosyltransferase OS=Populus trichocarpa GN=GolS3 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07466: 9172-10807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_020 0.0 - - galactinol synthase family protein [Populus trichocarpa]
2 Hb_000020_070 0.1246948588 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
3 Hb_000123_240 0.1333904302 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_005080_020 0.1539374068 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_048476_040 0.1561453589 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
6 Hb_007218_060 0.1588222917 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
7 Hb_012366_050 0.1619889853 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
8 Hb_001898_130 0.1644320464 - - ATP binding protein, putative [Ricinus communis]
9 Hb_006120_150 0.1661309719 - - invertase [Hevea brasiliensis]
10 Hb_001636_060 0.1743142954 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
11 Hb_054865_050 0.175419445 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_132840_020 0.1819852069 - - PREDICTED: protein LHY [Jatropha curcas]
13 Hb_001123_190 0.1840652283 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
14 Hb_000086_640 0.1844996139 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
15 Hb_001318_150 0.1848244777 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
16 Hb_015807_080 0.186104222 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
17 Hb_000272_110 0.1876134316 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
18 Hb_001474_050 0.1886786119 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
19 Hb_178818_010 0.1908452069 - - CRINKLY4 related 3, putative [Theobroma cacao]
20 Hb_161901_020 0.1923162813 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_001247_020 Hb_001247_020 Hb_000020_070 Hb_000020_070 Hb_001247_020--Hb_000020_070 Hb_000123_240 Hb_000123_240 Hb_001247_020--Hb_000123_240 Hb_005080_020 Hb_005080_020 Hb_001247_020--Hb_005080_020 Hb_048476_040 Hb_048476_040 Hb_001247_020--Hb_048476_040 Hb_007218_060 Hb_007218_060 Hb_001247_020--Hb_007218_060 Hb_012366_050 Hb_012366_050 Hb_001247_020--Hb_012366_050 Hb_001636_060 Hb_001636_060 Hb_000020_070--Hb_001636_060 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_001511_250 Hb_001511_250 Hb_000020_070--Hb_001511_250 Hb_000020_070--Hb_005080_020 Hb_119316_020 Hb_119316_020 Hb_000020_070--Hb_119316_020 Hb_006120_150 Hb_006120_150 Hb_000123_240--Hb_006120_150 Hb_025708_010 Hb_025708_010 Hb_000123_240--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_000123_240--Hb_025708_020 Hb_002343_010 Hb_002343_010 Hb_000123_240--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_000123_240--Hb_002766_050 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_048476_040--Hb_132840_020 Hb_048476_040--Hb_000329_790 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_000086_620 Hb_000086_620 Hb_007218_060--Hb_000086_620 Hb_007218_060--Hb_119316_020 Hb_007218_060--Hb_001369_020 Hb_007218_060--Hb_001636_060 Hb_007218_060--Hb_001511_250 Hb_110558_010 Hb_110558_010 Hb_012366_050--Hb_110558_010 Hb_001123_190 Hb_001123_190 Hb_012366_050--Hb_001123_190 Hb_009449_100 Hb_009449_100 Hb_012366_050--Hb_009449_100 Hb_026698_020 Hb_026698_020 Hb_012366_050--Hb_026698_020 Hb_001514_240 Hb_001514_240 Hb_012366_050--Hb_001514_240 Hb_012366_050--Hb_048476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.354666 4.81647 6.29376 1.96861 0.144735 0.0863382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.415651 0.326953 2.00502 1.49367 2.6359

CAGE analysis