Hb_001247_080

Information

Type -
Description -
Location Contig1247: 47738-48064
Sequence    

Annotation

kegg
ID rcu:RCOM_1436110
description hypothetical protein
nr
ID XP_002512555.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1436110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001584_040 0.1093424669 - - PREDICTED: uncharacterized protein LOC105125166 [Populus euphratica]
3 Hb_000245_070 0.1292471432 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
4 Hb_004757_040 0.1697299291 - - -
5 Hb_000365_040 0.1757673397 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
6 Hb_002835_120 0.1837940143 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
7 Hb_108216_030 0.1873621623 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
8 Hb_001269_440 0.1964862087 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
9 Hb_002374_070 0.19911012 - - amino acid transporter, putative [Ricinus communis]
10 Hb_000638_110 0.199730579 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
11 Hb_001141_010 0.1999253452 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
12 Hb_005183_020 0.2017072672 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
13 Hb_004125_080 0.2042571065 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
14 Hb_009466_040 0.2054348565 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
15 Hb_000976_090 0.2057969828 - - -
16 Hb_006590_040 0.2071554666 - - amino acid permease, putative [Ricinus communis]
17 Hb_000032_160 0.2072965497 - - conserved hypothetical protein [Ricinus communis]
18 Hb_024066_030 0.2084505743 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_002411_070 0.2086743875 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
20 Hb_002053_070 0.2097550395 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]

Gene co-expression network

sample Hb_001247_080 Hb_001247_080 Hb_001584_040 Hb_001584_040 Hb_001247_080--Hb_001584_040 Hb_000245_070 Hb_000245_070 Hb_001247_080--Hb_000245_070 Hb_004757_040 Hb_004757_040 Hb_001247_080--Hb_004757_040 Hb_000365_040 Hb_000365_040 Hb_001247_080--Hb_000365_040 Hb_002835_120 Hb_002835_120 Hb_001247_080--Hb_002835_120 Hb_108216_030 Hb_108216_030 Hb_001247_080--Hb_108216_030 Hb_002820_100 Hb_002820_100 Hb_001584_040--Hb_002820_100 Hb_001584_040--Hb_000245_070 Hb_009466_040 Hb_009466_040 Hb_001584_040--Hb_009466_040 Hb_001147_120 Hb_001147_120 Hb_001584_040--Hb_001147_120 Hb_001825_030 Hb_001825_030 Hb_001584_040--Hb_001825_030 Hb_000245_070--Hb_004757_040 Hb_000007_020 Hb_000007_020 Hb_000245_070--Hb_000007_020 Hb_001269_440 Hb_001269_440 Hb_000245_070--Hb_001269_440 Hb_000245_070--Hb_002835_120 Hb_006590_040 Hb_006590_040 Hb_000245_070--Hb_006590_040 Hb_008200_010 Hb_008200_010 Hb_000245_070--Hb_008200_010 Hb_103632_010 Hb_103632_010 Hb_004757_040--Hb_103632_010 Hb_000638_110 Hb_000638_110 Hb_004757_040--Hb_000638_110 Hb_001141_010 Hb_001141_010 Hb_004757_040--Hb_001141_010 Hb_001255_030 Hb_001255_030 Hb_004757_040--Hb_001255_030 Hb_002837_150 Hb_002837_150 Hb_004757_040--Hb_002837_150 Hb_000365_040--Hb_108216_030 Hb_005396_030 Hb_005396_030 Hb_000365_040--Hb_005396_030 Hb_000733_090 Hb_000733_090 Hb_000365_040--Hb_000733_090 Hb_000860_030 Hb_000860_030 Hb_000365_040--Hb_000860_030 Hb_111985_090 Hb_111985_090 Hb_000365_040--Hb_111985_090 Hb_005736_110 Hb_005736_110 Hb_002835_120--Hb_005736_110 Hb_002835_120--Hb_001141_010 Hb_002835_120--Hb_002837_150 Hb_002835_120--Hb_000638_110 Hb_145975_010 Hb_145975_010 Hb_002835_120--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_002835_120--Hb_000349_280 Hb_003952_080 Hb_003952_080 Hb_108216_030--Hb_003952_080 Hb_156850_040 Hb_156850_040 Hb_108216_030--Hb_156850_040 Hb_009851_040 Hb_009851_040 Hb_108216_030--Hb_009851_040 Hb_001269_570 Hb_001269_570 Hb_108216_030--Hb_001269_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.63322 0 31.8647 1.47657 1.12214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.54341 0.773693

CAGE analysis